YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ULP1D_ARATH
Organism: Arabidopsis thaliana
Length: 584 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ULP1D_ARATH.

Description E-value Query
Range
Subject
Range
gi|77549348 - gi|77549348|gb|ABA92145.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japo...
375.0 [0..1] [575..1380]

Back

Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRKKEVID VDCSEKKDFV IDWSSAMDKE DEVPELEIVN TTKPTPPPPP TFFSDDQTDS  60
   61 PKLLTDRDLD EQLERKKAIL TLGPGLPDKG EKIRLKIADL EEEKQRRVLE GSKMEVDRSS 120
  121 KVVSSTSSGS DVLPQGNAVS KDTSRGNADS KDTSRQGNAD SKEVSRSTFS AVFSKPKTDS 180
  181 QSKKAFGKEL EDLGCERRKH KAGRKPVTRL SNGWRLLPDV GKAEHSAKQF DSGLKESKGN 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [241-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKSKEPYGKK RPMESSTYSL IDDDDDDDDD DDNDTSGHET PREWSWEKSP SQSSRRRKKS  60
   61 EDTVINVDEE EAQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [314-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTVAEQAAE LPEGLQEDIC YPTRDDPHFV QVCLKDLECL APREYLTSPV MNFYMRFLQQ  60
   61 QISSSNQISA DCHFFNTYFY KKLSDAVTYK GNDKDAFFVR FRRWWKGIDL FRKAYIFIPI 120
  121 HEDLHWSLVI VCIPDKKDES GLTILHLDSL GLHSRKSIVE NVKRFLKDEW NYLNQDDYSL 180
  181 DLPISEKVWK NLPRRISEAV VQVPQQKNDF DCGPFVLFFI KRFIEEAPQR LKRKDLGMFD 240
  241 KKWFRPDEAS ALRIKIRNTL IELFRVSDQT E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.522879
Match: 2iycA
Description: No description for 2iycA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle