YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61680057
Organism:	Escherichia coli
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61680057.

Description	E-value	Query Range	Subject Range
gi\|75857370, gi\|... - gi\|75857370\|ref\|ZP_00764986.1\| COG2975: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	117.0	[0..14]	[77..1]
gi\|28805588 - gi\|28805588\|dbj\|BAC58865.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28897376, gi\|... - gi\|28897376\|ref\|NP_796981.1\| hypothetical protein VP0602 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|149748058, gi... - gi\|153838543\|ref\|ZP_01991210.1\| conserved domain protein [Vibrio parahaemolyticus AQ3810], gi\|149748...	117.0	[0..14]	[77..1]
gi\|41690757, gi\|... - gi\|71065127\|ref\|YP_263854.1\| hypothetical protein Psyc_0559 [Psychrobacter arcticus 273-4], gi\|71038... gi\|92393055, gi\|... - gi\|93005377\|ref\|YP_579814.1\| hypothetical protein Pcryo_0547 [Psychrobacter cryohalolentis K5], gi\|9...	115.0	[0..14]	[77..6]
gi\|115422602, gi... - gi\|187478016\|ref\|YP_786040.1\| hypothetical protein BAV1514 [Bordetella avium 197N], gi\|115422602\|emb...	115.0	[0..14]	[77..1]
gi\|224467450, gi... - gi\|224582923\|ref\|YP_002636721.1\| hypothetical protein SPC_1114 [Salmonella enterica subsp. enterica ... gi\|214000611 - gi\|214000611\|ref\|ZP_03411346.1\| hypothetical protein Salmonellentericaenterica_08393 [Salmonella ent... gi\|213865075 - gi\|213865075\|ref\|ZP_03387194.1\| hypothetical protein SentesT_35117 [Salmonella enterica subsp. enter... gi\|213646431 - gi\|213646431\|ref\|ZP_03376484.1\| hypothetical protein SentesTy_03316 [Salmonella enterica subsp. ente... gi\|238912658 - gi\|238912658\|ref\|ZP_04656495.1\| hypothetical protein SentesTe_16207 [Salmonella enterica subsp. ente... gi\|16761451 - gi\|16761451\|ref\|NP_457068.1\| hypothetical protein STY2783 [Salmonella enterica subsp. enterica serov... gi\|16421082, gi\|... - gi\|16765857\|ref\|NP_461472.1\| hypothetical protein STM2537 [Salmonella typhimurium LT2], gi\|16421082\|... gi\|29136477, gi\|... - gi\|29140852\|ref\|NP_804194.1\| hypothetical protein t0319 [Salmonella enterica subsp. enterica serovar... gi\|168238275, gi... - gi\|197288860\|gb\|EDY28233.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar S... gi\|205333613, gi... - gi\|205333613\|gb\|EDZ20377.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar K... lcl\|NC_016856.1_... - [gene=yfhJ] [protein=hypothetical protein] [protein_id=YP_005238639.1] [location=complement(2729200.... gi\|167992662, gi... - gi\|205329156\|gb\|EDZ15920.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar 4... gi\|167549436, gi... - gi\|205325171\|gb\|EDZ13010.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar S... gi\|205341996, gi... - gi\|205341996\|gb\|EDZ28760.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar W... gi\|195630866, gi... - gi\|195630866\|gb\|EDX49458.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar N... gi\|205349633, gi... - gi\|205349633\|gb\|EDZ36264.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar H... gi\|168243321, gi... - gi\|205337608\|gb\|EDZ24372.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serovar H... gi\|161612699, gi... - gi\|161612699\|ref\|YP_001586664.1\| hypothetical protein SPAB_00396 [Salmonella enterica subsp. enteric... gi\|16503751, gi\|... - gi\|25513199\|pir\|\|AH0823 conserved hypothetical protein STY2783 [imported] - Salmonella enterica subs... gi\|161502308, gi... - gi\|161502308\|ref\|YP_001569420.1\| hypothetical protein SARI_00339 [Salmonella enterica subsp. arizona... gi\|206709748, gi... - gi\|207857945\|ref\|YP_002244596.1\| hypothetical protein SEN2517 [Salmonella enterica subsp. enterica s... gi\|205353636, gi... - gi\|205353636\|ref\|YP_002227437.1\| hypothetical protein SG2572 [Salmonella enterica subsp. enterica se... gi\|204929644, gi... - gi\|204929644\|ref\|ZP_03220718.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serov... gi\|199604211, gi... - gi\|200387113\|ref\|ZP_03213725.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serov... gi\|213612939 - gi\|213612939\|ref\|ZP_03370765.1\| hypothetical protein SentesTyp_10744 [Salmonella enterica subsp. ent... gi\|213582308 - gi\|213582308\|ref\|ZP_03364134.1\| hypothetical protein SentesTyph_14344 [Salmonella enterica subsp. en... gi\|213425317 - gi\|213425317\|ref\|ZP_03358067.1\| hypothetical protein SentesTyphi_06283 [Salmonella enterica subsp. e... gi\|213052346 - gi\|213052346\|ref\|ZP_03345224.1\| hypothetical protein Salmoneentericaenterica_05081 [Salmonella enter... gi\|194737775, gi... - gi\|194737775\|ref\|YP_002115599.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica sero... gi\|194455261, gi... - gi\|194468897\|ref\|ZP_03074881.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serov... gi\|194406267, gi... - gi\|194447963\|ref\|YP_002046598.1\| hypothetical protein SeHA_C2799 [Salmonella enterica subsp. enteric... gi\|194442923, gi... - gi\|194442923\|ref\|YP_002041798.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica sero... gi\|62128735, gi\|... - gi\|62181102\|ref\|YP_217519.1\| hypothetical protein SC2532 [Salmonella enterica subsp. enterica serova... gi\|197940377, gi... - gi\|198245861\|ref\|YP_002216602.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica sero... gi\|56126842, gi\|... - gi\|56412585\|ref\|YP_149660.1\| hypothetical protein SPA0329 [Salmonella enterica subsp. enterica serov... gi\|197092996, gi... - gi\|197361520\|ref\|YP_002141156.1\| hypothetical protein SSPA0311 [Salmonella enterica subsp. enterica ... gi\|197265567, gi... - gi\|197265567\|ref\|ZP_03165641.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica serov... gi\|197248422, gi... - gi\|197248422\|ref\|YP_002147492.1\| FeS assembly protein IscX [Salmonella enterica subsp. enterica sero...	115.0	[0..13]	[77..2]
tr\|A0A085PPQ7\|A0... - FeS assembly protein IscX OS=Vibrio cholerae GN=iscX PE=4 SV=1, Putative uncharacterized protein OS=... gi\|148875117, gi... - gi\|153829397\|ref\|ZP_01982064.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887511... gi\|150421362, gi... - gi\|75823787\|ref\|ZP_00753268.1\| COG2975: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|229530116, gi... - gi\|229530116\|ref\|ZP_04419506.1\| hypothetical protein VCG_003228 [Vibrio cholerae 12129(1)], gi\|22933... gi\|116218567, gi... - gi\|75817668\|ref\|ZP_00747991.1\| COG2975: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|227080933, gi... - gi\|227080933\|ref\|YP_002809484.1\| hypothetical protein VCM66_0712 [Vibrio cholerae M66-2], gi\|2270088... gi\|153220753, gi... - gi\|153220753\|ref\|ZP_01951864.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241203...	115.0	[0..14]	[77..1]
gi\|33573350 - gi\|33573350\|emb\|CAE37334.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596649 - gi\|33596649\|ref\|NP_884292.1\| hypothetical protein BPP2034 [Bordetella parapertussis 12822] gi\|33601265, gi\|... - gi\|33601265\|ref\|NP_888825.1\| hypothetical protein BB2282 [Bordetella bronchiseptica RB50], gi\|335757... gi\|33572515, gi\|... - gi\|33592867\|ref\|NP_880511.1\| hypothetical protein BP1805 [Bordetella pertussis Tohama I], gi\|3357251...	115.0	[0..14]	[77..1]
gi\|91225144, gi\|... - gi\|91225144\|ref\|ZP_01260366.1\| hypothetical protein V12G01_12990 [Vibrio alginolyticus 12G01], gi\|91...	115.0	[0..14]	[77..1]
ISCX_ECOL6 - Protein IscX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=iscX PE=3 SV=1 gi\|218690644, gi... - gi\|218690644\|ref\|YP_002398856.1\| hypothetical protein ECED1_2955 [Escherichia coli ED1a], gi\|2184282... ISCX_ECOL6 - Protein iscX OS=Escherichia coli O6 GN=iscX PE=3 SV=1 gi\|227887559, gi... - gi\|227887559\|ref\|ZP_04005364.1\| FeS assembly protein IscX [Escherichia coli 83972], gi\|227835909\|gb\|...	114.0	[0..13]	[77..2]
gi\|52008296, gi\|... - gi\|74317188\|ref\|YP_314928.1\| hypothetical protein Tbd_1170 [Thiobacillus denitrificans ATCC 25259], ...	114.0	[0..14]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSHHHHHH GSGLKWTDSR EIGEALYDAY PDLDPKTVRF TDMHQWICDL EDFDDDPQAS  60
   61 NEKILEAILL VWLDEAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	2bztA
Description:	No description for 2bztA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits