YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60593886, gi\|...
Organism:	Thermus thermophilus
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60593886, gi|....

Description	E-value	Query Range	Subject Range
SOJ_THET2 - Chromosome-partitioning ATPase Soj OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) G...	251.0	[0..1]	[249..1]
gi\|60594422, gi\|... - gi\|60594425\|pdb\|2BEK\|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein Soj, gi\|60...	250.0	[0..1]	[251..1]
gi\|55981939, gi\|... - gi\|55981939\|ref\|YP_145236.1\| ParA family chromosome partitioning ATPase [Thermus thermophilus HB8], ...	249.0	[0..1]	[249..1]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	246.0	[0..6]	[248..2]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	242.0	[0..6]	[248..2]
PARA_CAUCR - Chromosome partitioning protein ParA OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=parA PE... PARA_CAUCR - Chromosome partitioning protein ParA OS=Caulobacter crescentus GN=parA PE=3 SV=1 PARA_CAUCN - Chromosome partitioning protein ParA OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=parA PE=1 ...	238.0	[0..1]	[251..1]
gi\|106893737, gi... - gi\|158321886\|ref\|YP_001514393.1\| cobyrinic acid ac-diamide synthase [Alkaliphilus oremlandii OhILAs]...	237.0	[0..7]	[248..3]
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	236.0	[0..7]	[248..3]
gi\|51858156, gi\|... - gi\|51894467\|ref\|YP_077158.1\| ParA family ATPase [Symbiobacterium thermophilum IAM 14863], gi\|5185815...	236.0	[0..7]	[250..3]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAKVRRIA LANQKGGVGK TTTAINLAAY LARLGKRVLL VDLDPQGNAT SGLGVRAERG  60
   61 VYHLLQGEPL EGLVHPVDGF HLLPATPDLV GATVELAGAP TALREALRDE GYDLVLLDAP 120
  121 PSLSPLTLNA LAAAEGVVVP VQAEYYALEG VAGLLATLEE VRAGLNPRLR LLGILVTMYD 180
  181 GRTLLAQQVE AQLRAHFGEK VFWTVIPRNV RLAEAPSFGK TIAQHAPTSP GAHAYRRLAE 240
  241 EVMARVQEAG SHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits