YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61680778, gi\|...
Organism:	Homo sapiens
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61680778, gi|....

Description	E-value	Query Range	Subject Range
gi\|27356854 - gi\|27356854\|gb\|AAL89535.1\| putative CD209L1 protein [Pan troglodytes]	157.0	[0..6]	[133..311]
gi\|123994207 - gi\|123994207\|gb\|ABM84705.1\| C-type lectin domain family 4, member M [synthetic construct] CLEC4M - C-type lectin domain family 4, member M	156.0	[0..6]	[133..265]
CLC4M_SYMSY - C-type lectin domain family 4 member M OS=Symphalangus syndactylus GN=CLEC4M PE=3 SV=1	155.0	[0..6]	[132..288]
CD209_HYLLA - CD209 antigen OS=Hylobates lar GN=CD209 PE=3 SV=1	155.0	[0..6]	[133..299]
CLC4M_NOMCO - C-type lectin domain family 4 member M OS=Nomascus concolor GN=CLEC4M PE=3 SV=1	153.0	[0..6]	[132..265]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVANCSAPCP QDWIWHGENC YLFSSGSFNW EKSQEKCLSL DAKLLKINST ADLDFIQQAI  60
   61 SYSSFPFWMG LSRRNPSYPW LWEDGSPLMP HLFRVRGAVS QTYPSGTCAY IQRGAVYAEN 120
  121 CILAAFSICQ KKANL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1ypqA
Description:	Human Oxidized Low Density Lipoprotein Receptor LOX-1 Dioxane Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits