YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60593497
Organism:	Homo sapiens
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60593497.

Description	E-value	Query Range	Subject Range
gi\|62901828 - gi\|62901828\|gb\|AAY18865.1\| bet3 [synthetic construct]	301.0	[0..12]	[200..14]
gi\|114555735 - gi\|114555735\|ref\|XP_513093.2\| PREDICTED: similar to bet3 [Pan troglodytes]	278.0	[0..11]	[189..47]
gi\|73977068 - gi\|73977068\|ref\|XP_539594.2\| PREDICTED: similar to trafficking protein particle complex 3 (predicted...	278.0	[0..11]	[189..2]
gi\|148230479, gi... - gi\|32450223\|gb\|AAH53802.1\| Trappc3-prov protein [Xenopus laevis], gi\|148230479\|ref\|NP_001080521.1\| t...	277.0	[0..11]	[189..2]
gi\|89271912, gi\|... - gi\|89271912\|emb\|CAJ83649.1\| trafficking protein particle complex 3 [Xenopus tropicalis], gi\|62857629...	277.0	[0..11]	[189..2]
gi\|50417151, gi\|... - gi\|57525718\|ref\|NP_001003601.1\| trafficking protein particle complex 3 [Danio rerio], gi\|50417151\|gb...	276.0	[0..11]	[189..2]
TRAPPC3 - trafficking protein particle complex 3 ENSMMUT000000316... - null, null gi\|55586163 - gi\|55586163\|ref\|XP_513093.1\| PREDICTED: similar to Trafficking protein particle complex subunit 3 (B... CCDS404.1_1 - null	276.0	[0..11]	[189..2]
TPPC3_MOUSE - Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1 TPPC3_RAT - Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1	275.0	[0..11]	[189..2]
TPPC3_CHICK - Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1	275.0	[0..11]	[189..2]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHHHHHGS SRQANRGTES KKMSSELFTL TYGALVTQLC KDYENDEDVN KQLDKMGFNI  60
   61 GVRLIEDFLA RSNVGRCHDF RETADVIAKV AFKMYLGITP SITNWSPAGD EFSLILENNP 120
  121 LVDFVELPDN HSSLIYSNLL CGVLRGALEM VQMAVEAKFV QDTLKGDGVT EIRMRFIRRI 180
  181 EDNLPAGEEA AAWSHPQFEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1sz7A
Description:	Crystal structure of Human Bet3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits