YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554584
Organism:	Homo sapiens
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554584.

Description	E-value	Query Range	Subject Range
gi\|118403944, gi... - gi\|118403944\|ref\|NP_001072245.1\| complement component 8, gamma polypeptide, gene 2 [Xenopus (Siluran...	140.0	[0..2]	[152..26]
gi\|666121, gi\|14... - gi\|666121\|emb\|CAA59132.1\| cpl-1 [Xenopus laevis], gi\|147904028\|ref\|NP_001081513.1\| prostaglandin D2 ...	140.0	[0..2]	[152..27]
gi\|24899231 - gi\|24899231\|dbj\|BAC23126.1\| Lipocalin-type Prostaglandin D synthase [Hyla japonica]	139.0	[0..2]	[152..26]
LIPO_RHIMB - Lipocalin OS=Rhinella marina PE=1 SV=1	138.0	[0..2]	[152..26]
gi\|56269668, gi\|... - gi\|56269668\|gb\|AAH86943.1\| Alpha-2u globulin PGCL2 [Rattus norvegicus], gi\|21954404\|emb\|CAA32599.1\| ...	138.0	[0..3]	[152..28]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASDEEIQDVS GTWYLKAMTV DREFPEMNLE SVTPMTLTTL EGGNLEAKVT MLISGRCQEV  60
   61 KAVLEKTDEP GKYTADGGKH VAYIIRSHVK DHYIFYSEGE LHGKPVRGVK LVGRDPKNNL 120
  121 EALEDFEKAA GARGLSTESI LIPRQSETCS PGSAWSHPQF EK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1xkiA
Description:	Crystal structure of human tear lipocalin/von Ebners gland protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
odorant binding	2.15948526754701	bayes_pls_golite062009
binding	0.904830768687059	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: