YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554327, gi\|...
Organism:	Bacillus subtilis
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554327, gi|....

Description	E-value	Query Range	Subject Range
gi\|221317136 - gi\|221317136\|ref\|ZP_03598430.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321399 - gi\|221321399\|ref\|ZP_03602693.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. SMY] HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis GN=hslO PE=1 SV=1 gi\|221312203 - gi\|221312203\|ref\|ZP_03594008.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. NCIB 3... HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis (strain 168) GN=hslO PE=1 SV=1	402.0	[0..1]	[291..1]
gi\|229329365, gi... - gi\|229499781\|ref\|ZP_04393461.1\| Hsp33 protein [Geobacillus sp. Y412MC52], gi\|229329365\|gb\|EEN94919.1... gi\|221087989, gi... - gi\|221087989\|ref\|ZP_03557523.1\| Hsp33 protein [Geobacillus sp. Y412MC61], gi\|220707982\|gb\|EED63360.1... gi\|56418599, gi\|... - gi\|56418599\|ref\|YP_145917.1\| Hsp33-like chaperonin [Geobacillus kaustophilus HTA426], gi\|56378441\|db...	394.0	[0..2]	[291..5]
HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus (strain HTA426) GN=hslO PE=3 SV=2 HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus GN=hslO PE=3 SV=2	393.0	[0..2]	[291..3]
gi\|89100503, gi\|... - gi\|89100503\|ref\|ZP_01173364.1\| Hsp33-like chaperonin [Bacillus sp. NRRL B-14911], gi\|89084769\|gb\|EAR...	390.0	[0..2]	[289..3]
HSLO_BACLD - 33 kDa chaperonin OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NC...	389.0	[0..1]	[289..1]
HSLO_GEOSE - 33 kDa chaperonin OS=Geobacillus stearothermophilus GN=hslO PE=3 SV=2	384.0	[0..2]	[287..3]
HSLO_LACBA - 33 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=hslO PE=3 SV=1	382.0	[0..2]	[290..3]
HSLO_BACSK - 33 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=hslO PE=3 SV=1	380.0	[0..2]	[290..3]
HSLO_STAAS - 33 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=hslO PE=3 SV=1 gi\|253735247, gi... - gi\|253735247\|ref\|ZP_04869412.1\| heat shock protein Hsp33 [Staphylococcus aureus subsp. aureus TCH130... HSLO_STAAR - 33 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=hslO PE=3 SV=1 gi\|227900601, gi... - gi\|227900601\|ref\|ZP_04018406.1\| heat shock protein Hsp33 [Staphylococcus aureus subsp. aureus TCH60]... gi\|269202132\|ref... - Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus ED98] HSLO_STAA3 - 33 kDa chaperonin OS=Staphylococcus aureus (strain USA300) GN=hslO PE=3 SV=1 HSLO_STAAB - 33 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=hslO PE=3 SV=1 HSLO_STAAC - 33 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=hslO PE=3 SV=1 HSLO_STAA8 - 33 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=hslO PE=3 SV=1 HSLO_STAAT - 33 kDa chaperonin OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=hslO PE=3 SV=1 HSLO_STAAE - 33 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=hslO PE=3 SV=1 gi\|221142296 - gi\|221142296\|ref\|ZP_03566789.1\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus str. JKD6... gi\|87127126\|gb\|A... - 33 kDa chaperonin (Heat shock protein 33-like protein) [Staphylococcus aureus subsp. aureus USA300],... HSLO_STAAW - 33 kDa chaperonin OS=Staphylococcus aureus (strain MW2) GN=hslO PE=3 SV=1 gi\|221138561 - gi\|221138561\|ref\|ZP_03563363.1\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus str. JKD6... gi\|227247509, gi... - gi\|227556073\|ref\|ZP_03986120.1\| heat shock protein Hsp33 [Staphylococcus aureus subsp. aureus MN8], ...	380.0	[0..2]	[290..4]
gi\|255005305 - gi\|255005305\|ref\|ZP_05143906.2\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus Mu50-omeg... gi\|253315219 - gi\|253315219\|ref\|ZP_04838432.1\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus str. CF-M... HSLO_STAA9 - 33 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=hslO PE=3 SV=1 HSLO_STAA1 - 33 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hslO PE=3 SV=1 gi\|25308253 - pir\|\|A89818 hypothetical protein SA0470 [imported] - Staphylococcus aureus (strain N315) HSLO_STAAN - 33 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=hslO PE=1 SV=1 HSLO_STAA2 - 33 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=hslO PE=3 SV=1 HSLO_STAAM - 33 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=hslO PE=3 SV=1	379.0	[0..2]	[290..4]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLVKALAY DGKVRAYAAR TTDMVNEGQR RHGTWPTASA ALGRTMTASL MLGAMLKGDD  60
   61 KLTVKIEGGG PIGAIVADAN AKGEVRAYVS NPQVHFDLNA AGKLDVRRAV GTNGTLSVVK 120
  121 DLGLREFFTG QVEIVSGELG DDFTYYLVSS EQVPSSVGVG VLVNPDNTIL AAGGFIIQLM 180
  181 PGTDDETITK IEQRLSQVEP ISKLIQKGLT PEEILEEVLG EKPEILETMP VRFHCPCSKE 240
  241 RFETAILGLG KKEIQDMIEE DGQAEAVCHF CNEKYLFTKE ELEGLRDQTT R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	1vzyA
Description:	Crystal structure of the Bacillus subtilis HSP33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.55988368958585	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
protein binding	0.100538309706115	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: