YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61680607
Organism:	Homo sapiens
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61680607.

Description	E-value	Query Range	Subject Range
TF2H5_CHICK - General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1	113.0	[0..13]	[79..5]
gi\|225716198 - gi\|225716198\|gb\|ACO13945.1\| General transcription factor IIH subunit 5 [Esox lucius] gi\|125846362, gi... - gi\|56208041\|emb\|CAI20614.1\| novel protein similar to vertebrate TFIIH basal transcription factor com...	111.0	[0..13]	[79..5]
gi\|62859795 - gi\|62859795\|ref\|NP_001017298.1\| general transcription factor IIH, polypeptide 5 [Xenopus (Silurana) ...	111.0	[0..13]	[79..5]
gi\|109460743, gi... - gi\|186910271\|ref\|NP_001119560.1\| general transcription factor IIH, polypeptide 5 [Rattus norvegicus]... ENSCJAT00000006974 - null gi\|109072254 - gi\|109072254\|ref\|XP_001092693.1\| PREDICTED: similar to general transcription factor IIH, polypeptide... tr\|M3X5Q7\|M3X5Q7... - General transcription factor IIH subunit 5 OS=Felis catus GN=GTF2H5 PE=4 SV=1 GTF2H5 - general transcription factor IIH, polypeptide 5 CCDS5256.1_1 - null gi\|114609947, gi... - gi\|114609951\|ref\|XP_001145020.1\| PREDICTED: general transcription factor IIH, polypeptide 5 isoform ... TF2H5_BOVIN - General transcription factor IIH subunit 5 OS=Bos taurus GN=GTF2H5 PE=3 SV=1 tr\|G1U5T7\|G1U5T7... - pep:novel chromosome:oryCun2:12:148319860:148334709:1 gene:ENSOCUG00000025009 transcript:ENSOCUT0000... tr\|G3HFX4\|G3HFX4... - General transcription factor IIH subunit 5 OS=Cricetulus griseus GN=I79_009491 PE=4 SV=1 gi\|73946181 - gi\|73946181\|ref\|XP_855012.1\| PREDICTED: similar to general transcription factor IIH, polypeptide 5 [... gi\|167773397, gi... - gi\|208968459\|dbj\|BAG74068.1\| general transcription factor IIH, polypeptide 5 [synthetic construct], ...	110.0	[0..13]	[79..5]
TF2H5_MOUSE - General transcription factor IIH subunit 5 OS=Mus musculus GN=Gtf2h5 PE=1 SV=1	109.0	[0..13]	[79..5]
gi\|47224616 - gi\|47224616\|emb\|CAG03600.1\| unnamed protein product [Tetraodon nigroviridis]	107.0	[0..14]	[79..6]
gi\|58568923 - gi\|58568923\|gb\|AAW79008.1\| GekBS162P [Gekko japonicus]	103.0	[0..13]	[79..5]
gi\|109478021, gi... - gi\|109479096\|ref\|XP_001070315.1\| PREDICTED: similar to general transcription factor IIH, polypeptide...	101.0	[0..12]	[79..4]
gi\|218199880 - gi\|218199880\|gb\|EEC82307.1\| hypothetical protein OsI_26568 [Oryza sativa Indica Group] gi\|50938545, gi\|... - gi\|50938545\|ref\|XP_478800.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|34393555\|d...	97.0	[0..14]	[75..67]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHHHHHHSH GTRKGXLIEC DPAXKQFLLY LDESNALGKK FIIQDIDDTH VFVIAELVNV  60
   61 LQERVGELXD QNAFSLTQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1ydlA
Description:	Crystal Structure of the Human TFIIH, Northeast Structural Genomics Target HR2045.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits