YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61680422, gi\|...
Organism:	Homo sapiens
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61680422, gi|....

Description	E-value	Query Range	Subject Range
gi\|38111073, gi\|... - gi\|39971489\|ref\|XP_367135.1\| hypothetical protein MGG_07060 [Magnaporthe grisea 70-15], gb\|EAA56705....	273.0	[0..16]	[281..100]
gi\|79317456 - gi\|79317456\|ref\|NP_001031011.1\| IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter [Ar...	269.0	[0..16]	[274..16]
gi\|13752562 - gi\|13752562\|gb\|AAK38727.1\|AF369707_1 importin alpha 2 [Capsicum annuum]	269.0	[0..16]	[274..93]
gi\|84453224 - gi\|84453224\|dbj\|BAE71209.1\| putative importin alpha [Trifolium pratense]	268.0	[0..16]	[274..93]
gi\|42554110, gi\|... - gi\|46125527\|ref\|XP_387317.1\| hypothetical protein FG07141.1 [Gibberella zeae PH-1], gi\|42554110\|gb\|E...	267.0	[0..16]	[274..100]
gi\|33337497 - gi\|33337497\|gb\|AAQ13406.1\|AF005265_1 importin [Oryza sativa]	266.0	[0..16]	[274..91]
gi\|85098694 - gi\|85098694\|ref\|XP_960652.1\| importin alpha subunit [Neurospora crassa OR74A] gi\|32412524, gi\|... - gi\|32412524\|ref\|XP_326742.1\| probable importin alpha SRP1 [MIPS] [Neurospora crassa], gi\|28922164\|gb...	266.0	[0..16]	[274..100]
IMA1A_ORYSJ - Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2 IMA1A_ORYSA - Importin alpha-1a subunit - Oryza sativa (Rice)	265.0	[0..16]	[274..91]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSHHHHHHS SGLVPRGSHX RGQRGEVEQX KSCLRVLSQP XPPTAGEAEQ AADQQEREGA  60
   61 LELLADLCEN XDNAADFCQL SGXHLLVGRY LEAGAAGLRW RAAQLIGTCS QNVAAIQEQV 120
  121 LGLGALRKLL RLLDRDACDT VRVKALFAIS CLVREQEAGL LQFLRLDGFS VLXRAXQQQV 180
  181 QKLKVKSAFL LQNLLVGHPE HKGTLCSXGX VQQLVALVRT EHSPFHEHVL GALCSLVTDF 240
  241 PQGVRECREP ELGLEELLRH RCQLLQQHEE YQEELEFCEK LLQTCFSSPA DDSXDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1xqrA
Description:	Crystal structure of the HspBP1 core domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.373576425899935	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: