YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|188036098, gi...
Organism:	Escherichia coli
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|188036098, gi....

Description	E-value	Query Range	Subject Range
gi\|41466, gi\|598... - gi\|59895917\|gb\|AAX11338.1\| type 1 fimbrial adhesin precursor [Escherichia coli], gi\|41466\|emb\|CAA291...	250.0	[0..1]	[158..22]
gi\|81248077, gi\|... - gi\|82546666\|ref\|YP_410613.1\| minor fimbrial subunit [Shigella boydii Sb227], gi\|81248077\|gb\|ABB68785...	250.0	[0..1]	[158..22]
gi\|26251208, gi\|... - gi\|26251208\|ref\|NP_757248.1\| FimH protein precursor [Escherichia coli CFT073], gi\|26111640\|gb\|AAN838...	250.0	[0..1]	[158..25]
gi\|115515752, gi... - gi\|117626628\|ref\|YP_859951.1\| type 1 fimbiral adhesin FimH [Escherichia coli APEC O1], gi\|115515752\|... gi\|110644762, gi... - gi\|110644762\|ref\|YP_672492.1\| FimH protein precursor [Escherichia coli 536], gi\|110346354\|gb\|ABG7259...	250.0	[0..1]	[158..25]
gi\|75229718 - gi\|75229718\|ref\|ZP_00716251.1\| hypothetical protein EcolB7_01002091 [Escherichia coli B7A] gi\|75189040 - gi\|75189040\|ref\|ZP_00702307.1\| hypothetical protein EcolE_01002319 [Escherichia coli E24377A]	250.0	[0..1]	[158..25]
gi\|192956581, gi... - gi\|75235106\|ref\|ZP_00719362.1\| hypothetical protein EcolE1_01003113 [Escherichia coli E110019], gi\|1...	250.0	[0..1]	[158..25]
gi\|75212118 - gi\|75212118\|ref\|ZP_00712158.1\| hypothetical protein EcolB_01000719 [Escherichia coli B171]	249.0	[0..1]	[158..25]
gi\|187734155, gi... - gi\|75179380\|ref\|ZP_00699384.1\| hypothetical protein SboyB_01000485 [Shigella boydii BS512], gi\|18773...	249.0	[0..1]	[158..22]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FACKTANGTA IPIGGGSANV YVNLAPVVNV GQNLVVDLST QIFCHNDYPE TITDYVTLQR  60
   61 GSAYGGVLSN FSGTVKYSGS SYPFPTTSET PRVVYNSRTD KPWPVALYLT PVSSAGGVAI 120
  121 KAGSLIAVLI LRQTNNYNSD DFQFVWNIYA NNDVVVPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.045757
Match:	1uwfA
Description:	1.7 A resolution structure of the receptor binding domain of the FimH adhesin from uropathogenic E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits