YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61679987, gi\|...
Organism:	Homo sapiens
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61679987, gi|....

Description	E-value	Query Range	Subject Range
gi\|84313510, gi\|... - gi\|84313512\|gb\|ABC55466.1\| TIR-NBS disease resistance-like protein [(Populus tomentosa x P. bolleana...	152.0	[0..2]	[151..14]
gi\|105922786 - gi\|105922786\|gb\|ABF81437.1\| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]	149.0	[0..3]	[151..143]
gi\|40644189 - gi\|40644189\|emb\|CAC95124.1\| TIR/NBS/LRR protein [Populus deltoides]	149.0	[0..3]	[151..39]
gi\|23477201 - gi\|23477201\|emb\|CAD36199.1\| NLS-TIR-NBS disease resistance protein [Populus tremula]	148.0	[0..3]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDYDAYLSYT KVDPDQWNQE TGEEERFALE ILPDXLEKHY GYKLFIPDRD LIPTGTYIED  60
   61 VARCVDQSKR LIIVXTPNYV VRRGWSIFEL ETRLRNXLVT GEIKVILIEC SELRGIXNYQ 120
  121 EVEALKHTIK LLTVIKWHGP KCNKLNSKFW KRLQYEXPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1t3gA
Description:	Crystal structure of the Toll/interleukin-1 receptor (TIR) domain of human IL-1RAPL
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits