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View Structure Prediction Details

Protein: gi|61679776, gi|...
Organism: Drosophila melanogaster
Length: 89 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61679776, gi|....

Description E-value Query
Range		 Subject
Range
gi|109477142, gi... - gi|62649564|ref|XP_342901.2| PREDICTED: similar to Polycomb protein SCMH1 (Sex comb on midleg homolo...
 99.0 [0..1] [81..581]
SCMH1_MOUSE - Polycomb protein SCMH1 OS=Mus musculus GN=Scmh1 PE=1 SV=1
 99.0 [0..1] [81..581]
gi|73976705 - gi|73976705|ref|XP_848366.1| PREDICTED: similar to Polycomb protein SCMH1 (Sex comb on midleg homolo...
 98.0 [0..1] [81..583]
gi|114555851 - gi|114555851|ref|XP_001172731.1| PREDICTED: sex comb on midleg homolog 1 isoform 4 [Pan troglodytes]
 98.0 [0..1] [81..565]
gi|48146439 - gi|48146439|emb|CAG33442.1| SCMH1 [Homo sapiens]
 98.0 [0..1] [81..516]

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Predicted Domain #1
Region A:
Residues: [1-89] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTRANSHL RSQPIDWTIE EVIQYIESND NSLAVHGDLF RKHEIDGKAL LRLNSERMMK  60
   61 YMGLKLGPAL KICNLVNKVN GRDHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1pk3A
Description: Scm SAM domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.633600780660145 bayes_pls_golite062009
protein binding 0.29861856894481 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle