YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56967162, gi\|...
Organism:	Escherichia coli
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56967162, gi|....

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	237.0	[0..6]	[274..1062]
gi\|72002781, gi\|... - gi\|72382931\|ref\|YP_292286.1\| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...	236.0	[0..3]	[274..90]
gi\|46119251, gi\|... - gi\|67923685\|ref\|ZP_00517153.1\| TPR repeat:TPR repeat [Crocosphaera watsonii WH 8501], gi\|67854485\|gb...	231.0	[0..3]	[274..240]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	229.0	[0..2]	[274..154]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	228.0	[0..2]	[259..97]
gi\|40063047 - gi\|40063047\|gb\|AAR37903.1\| TPR domain/sulfotransferase domain protein [uncultured marine bacterium 5...	228.0	[0..2]	[273..110]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNTSWRKSEV LAVPLQPTLQ QEVILARXEQ ILASRALTDD ERAQLLYERG VLYDSLGLRA  60
   61 LARNDFSQAL AIRPDXPEVF NYLGIYLTQA GNFDAAYEAF DSVLELDPTY NYAHLNRGIA 120
  121 LYYGGRDKLA QDDLLAFYQD DPNDPFRSLW LYLAEQKLDE KQAKEVLKQH FEKSDKEQWG 180
  181 WNIVEFYLGN ISEQTLXERL KADATDNTSL AEHLSETNFY LGKYYLSLGD LDSATALFKL 240
  241 AVANNVHNFV EHRYALLELS LLGQDQDDLA ESDQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1xnfA
Description:	Crystal structure of E.coli TPR-protein NlpI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0016189620256075	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: