YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|58176963
Organism:	Homo sapiens
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|58176963.

Description	E-value	Query Range	Subject Range
gi\|89027550, gi\|... - gi\|89027550\|ref\|XP_499363.2\| PREDICTED: hypothetical protein [Homo sapiens], gi\|51094863\|gb\|EAL24109...	155.0	[0..3]	[96..213]
gi\|114615844 - gi\|114615844\|ref\|XP_519364.2\| PREDICTED: gamma filamin [Pan troglodytes]	155.0	[0..3]	[96..2478]
FLNC_MOUSE - (Q8VHX6) Filamin-C (Gamma-filamin) (Filamin-2) (FLN-C) (Actin-binding-like protein) (ABP-L) (ABP-280...	153.0	[0..3]	[96..1051]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMGSDASKVV TRGPGLSQAF VGQKNSFTVD CSKAGTNMMM VGVHGPKTPC EEVYVKHMGN  60
   61 RVYNVTYTVK EKGDYILIVK WGDESVPGSP FKVKVP

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Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1v05A
Description:	Dimerization of human Filamin C: crystal structure of the domain 24
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits