YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|58176683, gi\|...
Organism:	Homo sapiens
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|58176683, gi|....

Description	E-value	Query Range	Subject Range
gi\|82407410, gi\|... - gi\|82407410\|pdb\|1X24\|B Chain B, Prl-1 (Ptp4a), gi\|82407409\|pdb\|1X24\|A Chain A, Prl-1 (Ptp4a)	187.0	[0..1]	[159..22]
gi\|60654551 - gi\|60654551\|gb\|AAX29966.1\| protein tyrosine phosphatase type IVA member 1 [synthetic construct]	185.0	[0..1]	[159..2]
TP4A1_MOUSE - Protein tyrosine phosphatase type IVA 1 OS=Mus musculus GN=Ptp4a1 PE=1 SV=1 ENSOCUP000000054... - pep:novel chromosome:oryCun2:12:50335248:50338444:1 gene:ENSOCUG00000006311 transcript:ENSOCUT000000... gi\|57095050, gi\|... - gi\|73973186\|ref\|XP_866965.1\| PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 2 [Canis... CCDS4965.1_1 - null gi\|123979624, gi... - gi\|61364317\|gb\|AAX42524.1\| protein tyrosine phosphatase type IVA member 1 [synthetic construct], gi\|... gi\|1083833 - gi\|1083833\|pir\|\|A56059 protein-tyrosine-phosphatase (EC 3.1.3.48) PRL-1 - rat TP4A1_MACFA - Protein tyrosine phosphatase type IVA 1 OS=Macaca fascicularis GN=PTP4A1 PE=1 SV=1 gi\|114611665, gi... - gi\|55626904\|ref\|XP_527425.1\| PREDICTED: similar to tyrosine phosphatase isoform 3 [Pan troglodytes],... PTP4A1 - protein tyrosine phosphatase type IVA, member 1 TP4A1_RAT - Protein tyrosine phosphatase type IVA 1 OS=Rattus norvegicus GN=Ptp4a1 PE=1 SV=1	184.0	[0..1]	[159..2]
gi\|542150125\|ref... - PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X2 [Zonotrichia albicollis], PREDICTED: p... gi\|224048583 - gi\|224048583\|ref\|XP_002193977.1\| PREDICTED: protein tyrosine phosphatase type IVA, member 1 [Taeniop... gi\|56605916, gi\|... - gi\|56605916\|ref\|NP_001008461.1\| protein tyrosine phosphatase type IVA, member 1 [Gallus gallus], gi\|...	183.0	[0..1]	[159..2]
gi\|56118931, gi\|... - gi\|89273414\|emb\|CAJ82646.1\| protein tyrosine phosphatase type IVA, member 1 [Xenopus tropicalis], gi...	183.0	[0..1]	[159..2]
gi\|148235833, gi... - gi\|50604169\|gb\|AAH77539.1\| Ptp4a1-prov protein [Xenopus laevis], gi\|148235833\|ref\|NP_001086844.1\| pr...	183.0	[0..1]	[159..2]
TP4A1_PONPY - Protein tyrosine phosphatase type IVA protein 1 - Pongo pygmaeus (Orangutan) TP4A1_PONAB - Protein tyrosine phosphatase type IVA 1 OS=Pongo abelii GN=PTP4A1 PE=2 SV=1	182.0	[0..1]	[159..2]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARXNRPAPVE VTYKNXRFLI THNPTNATLN KFIEELKKYG VTTIVRVCEA TYDTTLVEKE  60
   61 GIHVLDWPFD DGAPPSNQIV DDWLSLVKIK FREEPGCCIA VHCVAGLGRA PVLVALALIE 120
  121 GGXKYEDAVQ FIRQKRRGAF NSKQLLYLEK YRPKXRLRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1x24A
Description:	Prl-1 (ptp4a)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits