YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60594282, gi\|...
Organism:	Bacillus subtilis
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60594282, gi|....

Description	E-value	Query Range	Subject Range
gi\|59712711, gi\|... - gi\|59712711\|ref\|YP_205487.1\| ligase [Vibrio fischeri ES114], gi\|59480812\|gb\|AAW86599.1\| predicted li...	224.0	[0..2]	[185..4]
gi\|84376740, gi\|... - gi\|84390086\|ref\|ZP_00991348.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	223.0	[0..2]	[185..6]
gi\|86146375, gi\|... - gi\|86146375\|ref\|ZP_01064699.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	222.0	[0..2]	[185..6]
gi\|71280724, gi\|... - gi\|71280724\|ref\|YP_270316.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Colwellia psychre...	221.0	[0..2]	[185..4]
gi\|254230209, gi... - gi\|75853743\|ref\|ZP_00761514.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio sp. Ex25], gi\|...	221.0	[0..2]	[187..6]
gi\|24372363, gi\|... - gi\|24372363\|ref\|NP_716405.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Shewanella oneide... SO0774 - 5-formyltetrahydrofolate cyclo-ligase family protein	218.0	[0..2]	[185..36]
gi\|37527472, gi\|... - gi\|37527472\|ref\|NP_930816.1\| hypothetical protein plu3604 [Photorhabdus luminescens subsp. laumondii...	216.0	[0..1]	[185..9]
gi\|126510113, gi... - gi\|153819332\|ref\|ZP_01971999.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|153822866, gi... - gi\|229512342\|ref\|ZP_04401821.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae B33], gi\|2293... gi\|75829168, gi\|... - gi\|75829168\|ref\|ZP_00758481.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae MO10]... gi\|227082599, gi... - gi\|227082599\|ref\|YP_002811150.1\| hypothetical protein VCM66_2401 [Vibrio cholerae M66-2], gi\|2270104... gi\|229507463, gi... - gi\|229507463\|ref\|ZP_04396968.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae BX 330286], g... gi\|229519478, gi... - gi\|229519478\|ref\|ZP_04408921.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae RC9], gi\|2293... gi\|229369623, gi... - gi\|229606968\|ref\|YP_002877616.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae MJ-1236], gi... gi\|11278428 - pir\|\|A82072 conserved hypothetical protein VC2479 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121547403, gi... - gi\|121590762\|ref\|ZP_01678092.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215474... gi\|9657058, gi\|1... - gi\|9657058\|gb\|AAF95621.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|124118870, gi... - gi\|153222433\|ref\|ZP_01953167.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241188...	216.0	[0..2]	[185..5]
gi\|254226257, gi... - gi\|75817952\|ref\|ZP_00748198.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae V51],...	216.0	[0..2]	[185..5]
gi\|27364918, gi\|... - gi\|27364918\|ref\|NP_760446.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus CMCP6], gi\|273... gi\|37681033, gi\|... - gi\|37681033\|ref\|NP_935642.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus YJ016], gi\|371...	216.0	[0..2]	[185..6]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSQLRKKTL EALSALSNED ILQKTERXYK YLFSLPEWQN AGTIAVTISR GLEIPTRPVI  60
   61 EQAWEEGKQV CIPKCHPDTK KXQFRTYQTD DQLETVYAGL LEPVIEKTKE VNPSQIDLXI 120
  121 VPGVCFDVNG FRVGFGGGYY DRYLSEYEGK TVSLLLECQL FAHVPRLPHD IPVHKLITED 180
  181 RIISCFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.045757
Match:	1ydmA
Description:	X-Ray structure of Northeast Structural Genomics target SR44
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits