YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554489, gi\|...
Organism:	Escherichia coli
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554489, gi|....

Description	E-value	Query Range	Subject Range
gi\|77630569, gi\|... - gi\|77630569\|ref\|ZP_00793155.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia pseudotubercul...	354.0	[0..1]	[290..99]
gi\|45443613, gi\|... - gi\|45443613\|ref\|NP_995152.1\| putative sulfite oxidase subunit YedY [Yersinia pestis biovar Microtus ... gi\|89105382 - gi\|89105382\|ref\|ZP_01177902.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia pestis biovar ... gi\|77634303 - gi\|77634303\|ref\|ZP_00796406.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia pestis Angola]	354.0	[0..1]	[290..99]
gi\|21956878, gi\|... - gi\|22124125\|ref\|NP_667548.1\| putative sulfite oxidase subunit YedY [Yersinia pestis KIM], gi\|2195687...	354.0	[0..1]	[290..105]
gi\|165937401, gi... - gi\|165937401\|ref\|ZP_02225964.1\| yedY protein [Yersinia pestis biovar Orientalis str. IP275], gi\|1659... gi\|108777317, gi... - gi\|229904165\|ref\|ZP_04519276.1\| predicted reductase [Yersinia pestis Nepal516], gi\|229678283\|gb\|EEO7... gi\|165920492, gi... - gi\|165927598\|ref\|ZP_02223430.1\| yedY protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|108809666, gi... - gi\|108809666\|ref\|YP_653582.1\| putative sulfite oxidase subunit YedY [Yersinia pestis Antiqua], gi\|10... gi\|166204681, gi... - gi\|166214194\|ref\|ZP_02240229.1\| yedY protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|166011324, gi... - gi\|166011324\|ref\|ZP_02232222.1\| yedY protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|162418710, gi... - gi\|162418710\|ref\|YP_001605742.1\| putative sulfite oxidase subunit YedY [Yersinia pestis Angola], gi\|... MSRP_YERPE - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Yersinia pestis GN=msrP PE=3 SV=1 gi\|229836809, gi... - gi\|229836809\|ref\|ZP_04456974.1\| predicted reductase [Yersinia pestis Pestoides A], gi\|229705752\|gb\|E... gi\|15981584, gi\|... - gi\|218930673\|ref\|YP_002348548.1\| putative sulfite oxidase subunit YedY [Yersinia pestis CO92], gi\|16... gi\|229695658, gi... - gi\|229839292\|ref\|ZP_04459451.1\| predicted reductase [Yersinia pestis biovar Orientalis str. PEXU2], ... gi\|229687346, gi... - gi\|229899854\|ref\|ZP_04514995.1\| predicted reductase [Yersinia pestis biovar Orientalis str. India 19... gi\|153997399, gi... - gi\|153997399\|ref\|ZP_02022499.1\| hypothetical protein YPE_3851 [Yersinia pestis CA88-4125], gi\|149289... gi\|167420755, gi... - gi\|167420755\|ref\|ZP_02312508.1\| yedY protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|167048569, gi... - gi\|167401983\|ref\|ZP_02307466.1\| yedY protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|167470336 - gi\|167470336\|ref\|ZP_02335040.1\| putative sulfite oxidase subunit YedY [Yersinia pestis FV-1] gi\|167055491, gi... - gi\|167425477\|ref\|ZP_02317230.1\| yedY protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|...	352.0	[0..1]	[290..77]
MSRP_YERPS - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Yersinia pseudotuberculosis serotyp... Y3568_YERPS, YED... - Sulfoxide reductase catalytic subunit yedY OS=Yersinia pseudotuberculosis GN=yedY PE=3 SV=1, UPF0190... gi\|169749247, gi... - gi\|170022713\|ref\|YP_001719218.1\| putative sulfite oxidase subunit YedY [Yersinia pseudotuberculosis ... gi\|186700079, gi... - gi\|186897053\|ref\|YP_001874165.1\| putative sulfite oxidase subunit YedY [Yersinia pseudotuberculosis ...	352.0	[0..1]	[290..77]
gi\|238782966, gi... - gi\|77958854\|ref\|ZP_00822881.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia bercovieri ATC...	348.0	[0..1]	[290..57]
MSRP_ECO45 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Escherichia coli O45:K1 (strain S88... MSRP_ECOUT - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Escherichia coli (strain UTI89 / UP... MSRP_ECOK1 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Escherichia coli O1:K1 / APEC GN=ms...	348.0	[0..1]	[290..45]
gi\|77978752, gi\|... - gi\|77978752\|ref\|ZP_00834177.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia intermedia ATC...	347.0	[0..1]	[290..59]
gi\|188013904, gi... - gi\|188013904\|gb\|EDU52026.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str. EC4... gi\|189366002, gi... - gi\|189366002\|gb\|EDU84418.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str. EC4... gi\|187767095, gi... - gi\|187767095\|gb\|EDU30939.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str. EC4... gi\|209766610, gi... - pir\|\|E90967 probable reductase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952... gi\|254793623, gi... - gi\|254793623\|ref\|YP_003078460.1\| predicted reductase [Escherichia coli O157:H7 str. TW14359], gi\|254... MSRP_ECO5E - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Escherichia coli O157:H7 (strain EC... gi\|217328798, gi... - gi\|217328798\|ref\|ZP_03444879.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str.... MSRP_ECO57 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Escherichia coli O157:H7 GN=msrP PE... gi\|195940658 - gi\|195940658\|ref\|ZP_03086040.1\| putative sulfite oxidase subunit YedY [Escherichia coli O157:H7 str.... gi\|208725274, gi... - gi\|208810758\|ref\|ZP_03252634.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str.... gi\|208731363, gi... - gi\|208817020\|ref\|ZP_03258140.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str.... gi\|208738864, gi... - gi\|208818741\|ref\|ZP_03259061.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str.... gi\|13362177, gi\|... - gi\|15831963\|ref\|NP_310736.1\| putative sulfite oxidase subunit YedY [Escherichia coli O157:H7 str. Sa... gi\|168783370, gi... - gi\|188999315\|gb\|EDU68301.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str. EC4... gi\|189371057, gi... - gi\|189371057\|gb\|EDU89473.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str. EC8... gi\|168801748, gi... - gi\|189376138\|gb\|EDU94554.1\| oxidoreductase, molybdopterin binding [Escherichia coli O157:H7 str. EC5... gi\|194418103, gi... - gi\|194433674\|ref\|ZP_03065950.1\| oxidoreductase, molybdopterin binding [Shigella dysenteriae 1012], g...	346.0	[0..1]	[290..45]
YEDY_ECOL6 - Sulfoxide reductase catalytic subunit yedY OS=Escherichia coli O6 GN=yedY PE=3 SV=1 gi\|237705929, gi... - gi\|237705929\|ref\|ZP_04536410.1\| yedY [Escherichia sp. 3_2_53FAA], gi\|226900686\|gb\|EEH86945.1\| yedY [... MSRP_ECOL6 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Escherichia coli O6:H1 (strain CFT0...	346.0	[0..1]	[290..45]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLLSWFKGND RPPAPAGKAL EFSKPAAWQN NLPLTPADKV SGYNNFYEFG LDKADPAANA  60
   61 GSLKTDPWTL KISGEVAKPL TLDHDDLTRR FPLEERIYRM RCVEAWSMVV PWIGFPLHKL 120
  121 LALAEPTSNA KYVAFETIYA PEQMPGQQDR FIGGGLKYPY VEGLRLDEAM HPLTLMTVGV 180
  181 YGKALPPQNG APVRLIVPWK YGFKGIKSIV SIKLTRERPP TTWNLAAPDE YGFYANVNPY 240
  241 VDHPRWSQAT ERFIGSGGIL DVQRQPTLLF NGYADQVASL YRGLDLRENF LEHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.39794
Match:	1xdqA
Description:	Structural and Biochemical Identification of a Novel Bacterial Oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.778719361129067	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: