YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|58177053, gi\|...
Organism:	Thermotoga maritima
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|58177053, gi|....

Description	E-value	Query Range	Subject Range
gi\|229329365, gi... - gi\|229499781\|ref\|ZP_04393461.1\| Hsp33 protein [Geobacillus sp. Y412MC52], gi\|229329365\|gb\|EEN94919.1... gi\|221087989, gi... - gi\|221087989\|ref\|ZP_03557523.1\| Hsp33 protein [Geobacillus sp. Y412MC61], gi\|220707982\|gb\|EED63360.1... gi\|56418599, gi\|... - gi\|56418599\|ref\|YP_145917.1\| Hsp33-like chaperonin [Geobacillus kaustophilus HTA426], gi\|56378441\|db...	359.0	[0..1]	[299..1]
HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus (strain HTA426) GN=hslO PE=3 SV=2 HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus GN=hslO PE=3 SV=2	357.0	[0..14]	[299..5]
gi\|56554327, gi\|... - gi\|56554328\|pdb\|1VZY\|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33, gi\|56554327\|pdb\|1V...	355.0	[0..14]	[295..4]
gi\|221317136 - gi\|221317136\|ref\|ZP_03598430.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321399 - gi\|221321399\|ref\|ZP_03602693.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. SMY] HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis GN=hslO PE=1 SV=1 gi\|221312203 - gi\|221312203\|ref\|ZP_03594008.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. NCIB 3... HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis (strain 168) GN=hslO PE=1 SV=1	355.0	[0..14]	[295..4]
gi\|89100503, gi\|... - gi\|89100503\|ref\|ZP_01173364.1\| Hsp33-like chaperonin [Bacillus sp. NRRL B-14911], gi\|89084769\|gb\|EAR...	353.0	[0..14]	[296..5]
HSLO_GEOSE - 33 kDa chaperonin OS=Geobacillus stearothermophilus GN=hslO PE=3 SV=2	350.0	[0..14]	[299..5]
HSLO_LACBA - 33 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=hslO PE=3 SV=1	349.0	[0..14]	[299..5]
HSLO_BACCN - 33 kDa chaperonin OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=h...	345.0	[0..14]	[294..5]
HSLO_BACLD - 33 kDa chaperonin OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NC...	345.0	[0..14]	[295..4]
gi\|92088688, gi\|... - gi\|92088688\|ref\|ZP_01273648.1\| Hsp33 protein [Lactobacillus reuteri 100-23], gi\|91804558\|gb\|EAS89397... gi\|148543506, gi... - gi\|89091363\|ref\|ZP_01164373.1\| heat shock protein HSP33 [Lactobacillus reuteri JCM 1112], gi\|8907880...	343.0	[0..1]	[300..1]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHMIYYGTMF DHKVRFSIVR MREVVEEARN RHALSYLATV VLGRALIGAA  60
   61 LVTPWLAEKE RWTLDIEGNG PIRRVVAQST SEFTVRGYVA NPKVELPLNE KGKFDVAGAI 120
  121 GQGVLRVVRD LGLKTPFVSQ VPLVSGEIAE DLAYYFAVSE QIPSAFSIGV LVDSDGVKIA 180
  181 GGFAVQIIDR TLEQEKVEMI EKNIKNLPSI SKLFQEAEPL DVLERIFGEK VGFVETAEIK 240
  241 YKCDCNREKA KNALLVLDKK ELEDMRKEGK GEVVCKWCNT RYVFSEEELE ELLKFKVDDS 300
  301 GS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	1vq0A
Description:	Crystal structure of 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33) (TM1394) from Thermotoga maritima at 2.20 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.55988368958585	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
protein binding	0.100538309706115	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: