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View Structure Prediction Details

Protein: ggr-2
Organism: Caenorhabditis elegans
Length: 513 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ggr-2.

Description E-value Query
Range
Subject
Range
ggr-2 - Glycine receptor status:Partially_confirmed UniProt:Q2WF65 protein_id:ABB88233.1
374.0 [0..1] [509..1]

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Predicted Domain #1
Region A:
Residues: [1-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVSSIFLL LYRNSPKVEA SRSEPVPIYL DNLLNAGRQV YDNQSPPVQH DKEEVTVVEL  60
   61 AMYIEGMSSF RTQTMDFQLD VYFQQFWRDP RLAHNETRRV LVKDKAVLHK MWKPDVYFAN 120
  121 ARIAEFHEVT QPNFLVWIQP DGSILYDTRI SMVVVCTLNL EKWPLDSQRC HLRILSYAYT 180
  181 TEQLVIKWKE DEPITRNPNI AMSDMHIVDL YPGLCDGNYS TGTWSCVTAE FFVKREITHH 240
  241 VMQSYVPTTL IVVISWFSFW LDVEAVPARV SLAITTLLTL STQANAARMA LPEVSYMKAI 300
  301 DVWMGACMMF VFGVMIEFTI VNYAQRQGRK WHRTDAEIVM ASSLESVKSG NAEKKPSRGD 360
  361 LGAHAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.154902
Match: 2bg9A
Description: Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [367-513]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLFLRLRTNE RQHLVEDPPE QIAMNDTAYD TVSQAYSNSF SDEEAAPVVQ PPQNEDAEAQ  60
   61 EEVWAEQKET NLSEVWKESD PAERLAHWNE KENDASSPLM GNGRAHVRYG AAEKMKNRKC 120
  121 NDSSRKKEKW SSAIKQIQKH KFVLFLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 1oedB
Description: Acetylcholine receptor protein, beta chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle