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View Structure Prediction Details

Protein: tbc-4
Organism: Caenorhabditis elegans
Length: 435 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbc-4.

Description E-value Query
Range
Subject
Range
gi|50751314 - gi|50751314|ref|XP_422340.1| PREDICTED: similar to ecotropic viral integration site 5 [Gallus gallus...
297.0 [0..1] [435..485]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATAALRRS SDYGSADTEC GEPCETGAPV SLNEVDLLAK MEQLNKSNEE DSRSVASKKT  60
   61 GSSESRKGAR EHSPEEDEED LWSVWGELI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNWEIEVKKR PNYIKDLVKR GIPQHFRMIA WQNLSNASVS SVHDLYSDYM RQSSVYEKVI  60
   61 QRDIPRTYPE LDFFKDGERG QSLLFNVIKA YSVHDKEVGY CQGSAFIVGL LLLQMPEEEA 120
  121 FAVLVSLMEN YRLRELYKPT MTDLGLCMFQ LECLVQDQMP DLYTHFNNMG FDTSMYASSW 180
  181 FLTLFTTTMP LDIANRIMDC FLVEGMDFIF CISIAILQQA RIELLRLDME GMLKYFQREV 240
  241 RERYEFDADL LFTVANQVQL NAKRMKRLEK DYLTKRTKEQ EEAVELRVSQ KYGIIKCYGQ 300
  301 DDVLRGRRRG GTFCSFFFLV ARNSRAHVSA KMLIHTHTHT HTLHAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 2qq8A
Description: No description for 2qq8A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle