YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56967015
Organism:	Homo sapiens
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56967015.

Description	E-value	Query Range	Subject Range
KRT84 - keratin 84	127.0	[0..3]	[86..393]
gi\|109481333 - gi\|109481333\|ref\|XP_001064779.1\| PREDICTED: similar to keratin Kb40 [Rattus norvegicus]	126.0	[0..3]	[86..483]
gi\|73996577 - gi\|73996577\|ref\|XP_543659.2\| PREDICTED: similar to type II keratin Kb21 [Canis familiaris]	126.0	[0..2]	[86..189]
gi\|114644576 - gi\|114644576\|ref\|XP_522391.2\| PREDICTED: cytokeratin type II [Pan troglodytes]	125.0	[0..3]	[86..379]
gi\|109096771 - gi\|109096771\|ref\|XP_001093676.1\| PREDICTED: keratin, hair, basic, 4 [Macaca mulatta]	125.0	[0..3]	[86..393]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSCQLSQLQC QLAAKEAKLR DLEDSLARER DTSRRLLAEK EREMAEMRAR MQQQLDEYQE  60
   61 LLDIKLALDM EIHAYRKLLE GEEERL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1x8yA
Description:	Human lamin coil 2B
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits