YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554694, gi\|...
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554694, gi|....

Description	E-value	Query Range	Subject Range
gi\|61196928 - gi\|61196928\|gb\|AAX39437.1\| unknown [Erwinia amylovora]	204.0	[0..1]	[129..31]
gi\|81244223, gi\|... - gi\|82542812\|ref\|YP_406759.1\| vertebrate C-lysozyme inhibitor [Shigella boydii Sb227], gi\|81244223\|gb... gi\|15799925, gi\|... - gi\|15799925\|ref\|NP_285937.1\| vertebrate C-lysozyme inhibitor [Escherichia coli O157:H7 EDL933], gi\|1... IVY_ECOLI - Inhibitor of vertebrate lysozyme precursor - Escherichia coli EG13547 - inhibitor of c-type lysozyme, periplasmic / Inhibitor of c-type lysozyme, periplasmic EG13547 - inhibitor of c-type lysozyme, periplasmic / Inhibitor of c-type lysozyme, periplasmic IVY_ECO57 - Inhibitor of vertebrate lysozyme OS=Escherichia coli O157:H7 GN=ivy PE=3 SV=1 gi\|238899612, gi... - gi\|238899612\|ref\|YP_002925408.1\| inhibitor of vertebrate C-lysozyme [Escherichia coli BW2952], gi\|23... gi\|242376051, gi... - gi\|251783778\|ref\|YP_002998082.1\| hypothetical protein B21_00219 [Escherichia coli BL21], gi\|24237605... gi\|89107095, gi\|... - gi\|89107095\|ref\|AP_000875.1\| inhibitor of vertebrate C-lysozyme [Escherichia coli str. K-12 substr. ... gi\|218552825, gi... - gi\|218552825\|ref\|YP_002385738.1\| C-lysozyme inhibitor [Escherichia coli IAI1], gi\|218359593\|emb\|CAQ9... gi\|254590779, gi... - gi\|254791379\|ref\|YP_003076216.1\| inhibitor of vertebrate C-lysozyme [Escherichia coli O157:H7 str. T... gi\|15829501, gi\|... - gi\|15829501\|ref\|NP_308274.1\| C-lysozyme inhibitor [Escherichia coli O157:H7 str. Sakai], gi\|13359703... gi\|218693704, gi... - gi\|218693704\|ref\|YP_002401371.1\| C-lysozyme inhibitor [Escherichia coli 55989], gi\|218350436\|emb\|CAU... gi\|218698836, gi... - gi\|218698836\|ref\|YP_002406465.1\| C-lysozyme inhibitor [Escherichia coli IAI39], gi\|218368822\|emb\|CAR... gi\|254287139, gi... - gi\|254287139\|ref\|YP_003052887.1\| inhibitor of vertebrate C-lysozyme [Escherichia coli BL21(DE3)], gi... gi\|218430590, gi... - gi\|218703493\|ref\|YP_002411012.1\| C-lysozyme inhibitor [Escherichia coli UMN026], gi\|218430590\|emb\|CA... gi\|254160336, gi... - gi\|254160336\|ref\|YP_003043444.1\| inhibitor of vertebrate C-lysozyme [Escherichia coli B str. REL606]... gi\|188492770, gi... - gi\|188492770\|ref\|ZP_03000040.1\| inhibitor of vertebrate lysozyme [Escherichia coli 53638], gi\|188487... gi\|195938623 - gi\|195938623\|ref\|ZP_03084005.1\| vertebrate C-lysozyme inhibitor [Escherichia coli O157:H7 str. EC402... gi\|209917432, gi... - gi\|209917432\|ref\|YP_002291516.1\| C-lysozyme inhibitor [Escherichia coli SE11], gi\|209910691\|dbj\|BAG7... gi\|218547667, gi... - gi\|218547667\|ref\|YP_002381458.1\| C-lysozyme inhibitor [Escherichia fergusonii ATCC 35469], gi\|218355... gi\|157159703, gi... - gi\|157159703\|ref\|YP_001457021.1\| C-lysozyme inhibitor [Escherichia coli HS], gi\|157065383\|gb\|ABV0463... gi\|157080931, gi... - gi\|157158901\|ref\|YP_001461408.1\| vertebrate C-lysozyme inhibitor [Escherichia coli E24377A], gi\|1570... gi\|170021392, gi... - gi\|170021392\|ref\|YP_001726346.1\| C-lysozyme inhibitor [Escherichia coli ATCC 8739], gi\|169756320\|gb\|... gi\|170079849, gi... - gi\|170079849\|ref\|YP_001729169.1\| inhibitor of vertebrate C-lysozyme [Escherichia coli str. K-12 subs... gi\|187430235, gi... - gi\|187733243\|ref\|YP_001879016.1\| Inhibitor of vertebrate lysozyme [Shigella boydii CDC 3083-94], gi\|...	203.0	[0..1]	[129..29]
gi\|190908393, gi... - gi\|191171459\|ref\|ZP_03033008.1\| Inhibitor of vertebrate lysozyme [Escherichia coli F11], gi\|19090839... gi\|215263445, gi... - gi\|215485373\|ref\|YP_002327804.1\| C-lysozyme inhibitor [Escherichia coli O127:H6 str. E2348/69], gi\|2... gi\|227884759, gi... - gi\|227884759\|ref\|ZP_04002564.1\| vertebrate C-lysozyme inhibitor [Escherichia coli 83972], gi\|2278383... gi\|26246268, gi\|... - gi\|26246268\|ref\|NP_752307.1\| vertebrate C-lysozyme inhibitor [Escherichia coli CFT073], gi\|26106666\|... gi\|110342049, gi... - gi\|110640457\|ref\|YP_668185.1\| C-lysozyme inhibitor [Escherichia coli 536], gi\|110342049\|gb\|ABG68286.... gi\|91070882, gi\|... - gi\|91209308\|ref\|YP_539294.1\| vertebrate C-lysozyme inhibitor [Escherichia coli UTI89], gi\|91070882\|g... gi\|115511648, gi... - gi\|117622524\|ref\|YP_851437.1\| vertebrate C-lysozyme inhibitor [Escherichia coli APEC O1], gi\|1155116... gi\|237707761, gi... - gi\|237707761\|ref\|ZP_04538242.1\| vertebrate C-lysozyme inhibitor [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|218557178, gi... - gi\|218557178\|ref\|YP_002390091.1\| C-lysozyme inhibitor [Escherichia coli S88], gi\|218363947\|emb\|CAR01... gi\|218425679, gi... - gi\|218688115\|ref\|YP_002396327.1\| C-lysozyme inhibitor [Escherichia coli ED1a], gi\|218425679\|emb\|CAR0...	203.0	[0..1]	[129..29]
gi\|73854339, gi\|... - gi\|74310862\|ref\|YP_309281.1\| vertebrate C-lysozyme inhibitor [Shigella sonnei Ss046], gi\|73854339\|gb...	203.0	[0..1]	[129..29]
gi\|82775612, gi\|... - gi\|82775612\|ref\|YP_401959.1\| vertebrate C-lysozyme inhibitor [Shigella dysenteriae Sd197], gi\|812397...	203.0	[0..1]	[129..29]
gi\|75513631 - gi\|75513631\|ref\|ZP_00736022.1\| hypothetical protein Ecol5_01002365 [Escherichia coli 53638] gi\|170520101, gi... - gi\|170682383\|ref\|YP_001742340.1\| inhibitor of vertebrate lysozyme [Escherichia coli SMS-3-5], gi\|170... gi\|75258775, gi\|... - gi\|75258775\|ref\|ZP_00730165.1\| hypothetical protein EcolE2_01001395 [Escherichia coli E22], gi\|19306... gi\|187768406, gi... - gi\|187776207\|ref\|ZP_02992883.1\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC41... gi\|75241705 - gi\|75241705\|ref\|ZP_00725542.1\| hypothetical protein EcolF_01001413 [Escherichia coli F11] gi\|75237319, gi\|... - gi\|75237319\|ref\|ZP_00721366.1\| hypothetical protein EcolE1_01001778 [Escherichia coli E110019], gi\|1... gi\|209395742, gi... - gi\|209395742\|ref\|YP_002268848.1\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC4... gi\|217324739, gi... - gi\|217324739\|ref\|ZP_03440823.1\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. TW14... gi\|208812140, gi... - gi\|208812140\|ref\|ZP_03253469.1\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC40... gi\|208738749, gi... - gi\|208818626\|ref\|ZP_03258946.1\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC40... gi\|75231178, gi\|... - gi\|75231178\|ref\|ZP_00717600.1\| hypothetical protein EcolB7_01000761 [Escherichia coli B7A], gi\|19116... gi\|189402406, gi... - gi\|189402406\|ref\|ZP_02782255.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC44... gi\|194414324, gi... - gi\|75211210\|ref\|ZP_00711317.1\| hypothetical protein EcolB_01001763 [Escherichia coli B171], gi\|19442... gi\|189361021, gi... - gi\|189403361\|ref\|ZP_02795025.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC44... gi\|75194441 - gi\|75194441\|ref\|ZP_00704511.1\| hypothetical protein EcolH_01000219 [Escherichia coli HS] gi\|188015552, gi... - gi\|188024972\|ref\|ZP_02775225.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC41... gi\|75189327 - gi\|75189327\|ref\|ZP_00702594.1\| hypothetical protein EcolE_01002612 [Escherichia coli E24377A] gi\|188999652, gi... - gi\|189010577\|ref\|ZP_02807987.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC40... gi\|75176781 - gi\|75176781\|ref\|ZP_00696897.1\| hypothetical protein SboyB_01003113 [Shigella boydii BS512] gi\|189377349, gi... - gi\|189405939\|ref\|ZP_02825349.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC50... gi\|194422847, gi... - gi\|83586301\|ref\|ZP_00924936.1\| hypothetical protein Ecol1_01002427 [Escherichia coli 101-1], gi\|1944... gi\|208805700, gi... - gi\|208805700\|ref\|ZP_03248037.1\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC42... gi\|189404304, gi... - gi\|189404304\|ref\|ZP_02788468.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC45... gi\|189405311, gi... - gi\|189405311\|ref\|ZP_02814699.2\| Inhibitor of vertebrate lysozyme [Escherichia coli O157:H7 str. EC86...	202.0	[0..1]	[129..21]
gi\|83570265 - gi\|83570265\|ref\|ZP_00921711.1\| hypothetical protein Sdys1_01001552 [Shigella dysenteriae 1012]	201.0	[0..1]	[129..21]
gi\|24111713, gi\|... - gi\|24111713\|ref\|NP_706223.1\| vertebrate C-lysozyme inhibitor [Shigella flexneri 2a str. 301], gi\|240... gi\|30061839, gi\|... - gi\|30061839\|ref\|NP_836010.1\| vertebrate C-lysozyme inhibitor [Shigella flexneri 2a str. 2457T], gi\|3... gi\|110613915, gi... - gi\|110804367\|ref\|YP_687887.1\| vertebrate C-lysozyme inhibitor [Shigella flexneri 5 str. 8401], gi\|11...	201.0	[0..1]	[129..29]
gi\|76152327 - gi\|76152327\|gb\|ABA39828.1\| unknown [Erwinia pyrifoliae]	201.0	[0..1]	[129..31]
gi\|29726213, gi\|... - gi\|29726213\|pdb\|1GPQ\|B Chain B, Structure Of Ivy Complexed With Its Target, Hewl, gi\|29726212\|pdb\|1G... gi\|29726213\|pdb\|... - Chain B, Structure Of Ivy Complexed With Its Target, Hewl, Chain A, Structure Of Ivy Complexed With ...	200.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDDLTISSLA KGETTKAAFN QMVQGHKLPA WVMKGGTYTP AQTVTLGDET YQVMSACKPH  60
   61 DCGSQRIAVM WSEKSNQMTG LFSTIDEKTS QEKLTWLNVN DALSIDGKTV LFAALTGSLE 120
  121 NHPDGFNFRS HHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	1xs0A
Description:	Structure of the E. coli Ivy protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits