YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554423, gi\|...
Organism:	Escherichia coli
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554423, gi|....

Description	E-value	Query Range	Subject Range
MUTL_CAUSK - DNA mismatch repair protein MutL OS=Caulobacter sp. (strain K31) GN=mutL PE=3 SV=1	227.0	[0..5]	[187..451]
gi\|114799039, gi... - gi\|114799039\|ref\|YP_759640.1\| DNA mismatch repair protein [Hyphomonas neptunium ATCC 15444], gi\|1147...	224.0	[0..1]	[187..437]
gi\|6018218 - gi\|6018218\|gb\|AAF01798.1\|AF170912_2 MutL homolog [Caulobacter crescentus] gi\|6018218 - gi\|6018218\|gb\|AAF01798.1\| MutL homolog [Caulobacter crescentus]	223.0	[0..5]	[187..334]
gi\|83852927, gi\|... - gi\|83859480\|ref\|ZP_00953001.1\| DNA mismatch repair protein MutL [Oceanicaulis alexandrii HTCC2633], ...	220.0	[0..4]	[187..445]
MUTL_CHESB - DNA mismatch repair protein MutL OS=Chelativorans sp. (strain BNC1) GN=mutL PE=3 SV=1	219.0	[0..7]	[187..430]
gi\|69132792, gi\|... - gi\|99079943\|ref\|YP_612097.1\| DNA mismatch repair protein [Silicibacter sp. TM1040], gi\|99036223\|gb\|A...	216.0	[0..4]	[187..451]
MUTL_RHOP5 - DNA mismatch repair protein MutL OS=Rhodopseudomonas palustris (strain BisA53) GN=mutL PE=3 SV=1	215.0	[0..1]	[187..407]
MUTL_BRUA2 - DNA mismatch repair protein MutL OS=Brucella abortus (strain 2308) GN=mutL PE=3 SV=1 MUTL_BRUAB - DNA mismatch repair protein MutL OS=Brucella abortus biovar 1 (strain 9-941) GN=mutL PE=3 SV=1 MUTL_BRUAB - DNA mismatch repair protein mutL OS=Brucella abortus GN=mutL PE=3 SV=1 gi\|254691352 - gi\|254691352\|ref\|ZP_05154606.1\| DNA mismatch repair protein [Brucella abortus bv. 6 str. 870] gi\|237787537, gi... - gi\|237816724\|ref\|ZP_04595716.1\| DNA mismatch repair protein MutL [Brucella abortus str. 2308 A], gi\|... gi\|254698443 - gi\|254698443\|ref\|ZP_05160271.1\| DNA mismatch repair protein [Brucella abortus bv. 2 str. 86/8/59] gi\|254695348 - gi\|254695348\|ref\|ZP_05157176.1\| DNA mismatch repair protein [Brucella abortus bv. 3 str. Tulya] gi\|254702632 - gi\|254702632\|ref\|ZP_05164460.1\| DNA mismatch repair protein [Brucella suis bv. 3 str. 686] gi\|254699509 - gi\|254699509\|ref\|ZP_05161337.1\| DNA mismatch repair protein [Brucella suis bv. 5 str. 513] gi\|254711470 - gi\|254711470\|ref\|ZP_05173281.1\| DNA mismatch repair protein [Brucella pinnipedialis B2/94] gi\|254706237 - gi\|254706237\|ref\|ZP_05168065.1\| DNA mismatch repair protein [Brucella pinnipedialis M163/99/10] MUTL_BRUA1 - DNA mismatch repair protein MutL OS=Brucella abortus (strain S19) GN=mutL PE=3 SV=1 gi\|254731891 - gi\|254731891\|ref\|ZP_05190469.1\| DNA mismatch repair protein [Brucella abortus bv. 4 str. 292] MUTL_BRUO2 - DNA mismatch repair protein MutL OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=mutL ... MUTL_BRUME - DNA mismatch repair protein mutL OS=Brucella melitensis GN=mutL PE=3 SV=1 MUTL_BRUSU - DNA mismatch repair protein mutL OS=Brucella suis GN=mutL PE=3 SV=1 MUTL_BRUSU - DNA mismatch repair protein MutL OS=Brucella suis biovar 1 (strain 1330) GN=mutL PE=3 SV=1 MUTL_BRUME - DNA mismatch repair protein MutL OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10...	214.0	[0..7]	[187..433]
gi\|89067221, gi\|... - gi\|89067221\|ref\|ZP_01154734.1\| DNA mismatch repair protein [Oceanicola granulosus HTCC2516], gi\|8904...	214.0	[0..7]	[187..418]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMSQSFGR VLTIVHSDCA LLERDGNISL LSLPVAERWL RQAQLTPGEA PVCAQPLLIP  60
   61 LRLKVSAEEK SALEKAQSAL AELGIDFQSD AQHVTIRAVP LPLRQQNLQI LIPELIGYLA 120
  121 KQSVFEPGNI AQWIARNLXS EHAQWSXAQA ITLLADVERL CPQLVKTPPG GLLQSVDLHP 180
  181 AIKALKDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1x9zA
Description:	Crystal structure of the MutL C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits