YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554402, gi\|...
Organism:	Homo sapiens
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554402, gi|....

Description	E-value	Query Range	Subject Range
gi\|68399208 - gi\|68399208\|ref\|XP_696575.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	97.0	[0..1]	[105..409]
gi\|49119498 - gi\|49119498\|gb\|AAH73619.1\| Eps15R protein [Xenopus laevis]	89.0	[0..1]	[105..406]
gi\|69275230, gi\|... - gi\|69275230\|ref\|ZP_00611142.1\| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histi...	89.0	[0..7]	[108..266]
gi\|50761168 - gi\|50761168\|ref\|XP_418263.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	89.0	[0..1]	[105..402]
gi\|109123809 - gi\|109123809\|ref\|XP_001113811.1\| PREDICTED: similar to epidermal growth factor receptor pathway subs...	87.0	[0..1]	[105..512]
gi\|168275788 - gi\|168275788\|dbj\|BAG10614.1\| epidermal growth factor receptor substrate 15 [synthetic construct] EPS15 - epidermal growth factor receptor pathway substrate 15	87.0	[0..1]	[105..356]
gi\|94497919, gi\|... - gi\|94497919\|ref\|ZP_01304484.1\| two-component system sensor protein [Sphingomonas sp. SKA58], gi\|9442...	87.0	[0..6]	[108..269]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETRDQVKK LQLMLRQAND QLEKTMKDKQ ELEDFIKQSS EDSSHQISAL VLRAQASEIL  60
   61 LEELQQGLSQ AKRDVQEQMA VLMQSREQVS EELVRLQKDN DSLQGKHSLH VS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1x79B
Description:	Crystal structure of human GGA1 GAT domain complexed with the GAT-binding domain of Rabaptin5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits