YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75827552
Organism:	Vibrio cholerae O395
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75827552.

Description	E-value	Query Range	Subject Range
gi\|229519277, gi... - gi\|229519277\|ref\|ZP_04408720.1\| chromosome segregation ATPase [Vibrio cholerae RC9], gi\|229343966\|gb... gi\|229513905, gi... - gi\|229513905\|ref\|ZP_04403367.1\| chromosome segregation ATPase [Vibrio cholerae TMA 21], gi\|229349086... gi\|229369822, gi... - gi\|229607167\|ref\|YP_002877815.1\| chromosome segregation ATPase [Vibrio cholerae MJ-1236], gi\|2293698... gi\|229341134, gi... - gi\|229522209\|ref\|ZP_04411626.1\| chromosome segregation ATPase [Vibrio cholerae TM 11079-80], gi\|2293... gi\|121586181, gi... - gi\|121586181\|ref\|ZP_01675972.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215495... gi\|153217365, gi... - gi\|153217365\|ref\|ZP_01951116.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113611\|... gi\|121628502, gi... - gi\|121729751\|ref\|ZP_01682190.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121628502\|g... gi\|124121449, gi... - gi\|153803006\|ref\|ZP_01957592.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121449... gi\|153221404, gi... - gi\|153221404\|ref\|ZP_01952382.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241197... gi\|126509130, gi... - gi\|153820323\|ref\|ZP_01972990.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|254845098, gi... - gi\|254849393\|ref\|ZP_05238743.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254845098\|... gi\|9656826, gi\|1... - gi\|9656826\|gb\|AAF95408.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11280806 - gi\|11280806\|pir\|\|G82097 conserved hypothetical protein VC2264 [imported] - Vibrio cholerae (strain N... gi\|126518835, gi... - gi\|229512142\|ref\|ZP_04401621.1\| chromosome segregation ATPase [Vibrio cholerae B33], gi\|229352107\|gb... gi\|194535836, gi... - gi\|254222921\|ref\|ZP_04916785.1\| conserved hypothetical protein [Vibrio cholerae RC385], gi\|194535836... gi\|153828223, gi... - gi\|153828223\|ref\|ZP_01980890.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887631... gi\|147675190, gi... - gi\|227118710\|ref\|YP_002820606.1\| hypothetical protein VC395_2380 [Vibrio cholerae O395], gi\|22701416... gi\|229507663, gi... - gi\|229507663\|ref\|ZP_04397168.1\| chromosome segregation ATPase [Vibrio cholerae BX 330286], gi\|229355... gi\|227010276, gi... - gi\|227082388\|ref\|YP_002810939.1\| hypothetical protein VCM66_2187 [Vibrio cholerae M66-2], gi\|2270102...	206.0	[0..1]	[127..11]
gi\|165939851, gi... - gi\|89105130\|ref\|ZP_01177655.1\| COG1196: Chromosome segregation ATPases [Yersinia pestis biovar Orien... Y514_YERPA - UPF0325 protein YPA_0514 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0514 PE=3 SV=1 Y3439_YERPG - UPF0325 protein YpAngola_A3439 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3439 PE=3... Y2962_YERPN - UPF0325 protein YPN_2962 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2962 PE=3 SV=1 Y1009_YERP3 - UPF0325 protein YpsIP31758_1009 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|45442579, gi\|... - gi\|45442579\|ref\|NP_994118.1\| hypothetical protein YP_2811 [Yersinia pestis biovar Microtus str. 9100... gi\|22127017, gi\|... - gi\|22127017\|ref\|NP_670440.1\| hypothetical protein y3141 [Yersinia pestis KIM], gi\|21960064\|gb\|AAM866... gi\|115346819, gi... - gi\|218928208\|ref\|YP_002346083.1\| hypothetical protein YPO1040 [Yersinia pestis CO92], gi\|16121340\|re... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3007 PE=3... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis GN=YPTB3007 PE=3 SV=1 gi\|149366959, gi... - gi\|149366959\|ref\|ZP_01888992.1\| hypothetical protein YPE_2223 [Yersinia pestis CA88-4125], gi\|149290... Y1673_YERPP - UPF0325 protein YPDSF_1673 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1673 PE=3 SV=1 gi\|165920982, gi... - gi\|165927086\|ref\|ZP_02222918.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166207410, gi... - gi\|166211639\|ref\|ZP_02237674.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011905, gi... - gi\|166011905\|ref\|ZP_02232803.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419810, gi... - gi\|167419810\|ref\|ZP_02311563.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167400075, gi... - gi\|167400075\|ref\|ZP_02305593.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167468858 - gi\|167468858\|ref\|ZP_02333562.1\| hypothetical protein YpesF_13399 [Yersinia pestis FV-1] gi\|167425350, gi... - gi\|167425350\|ref\|ZP_02317103.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229837747, gi... - gi\|229837747\|ref\|ZP_04457907.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229704124\|gb\|EEO... gi\|229697335, gi... - gi\|229840969\|ref\|ZP_04461128.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229843070, gi... - gi\|229843070\|ref\|ZP_04463220.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1040_YERPE - UPF0325 protein YPO1040/y3141/YP_2811 OS=Yersinia pestis GN=YPO1040 PE=3 SV=1 Y3127_YERPB - UPF0325 protein YPTS_3127 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3127 PE=... Y1062_YERPY - UPF0325 protein YPK_1062 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1062 PE=3...	205.0	[0..1]	[127..1]
Y1856_VIBVU, YI5... - (Q8DBG4) Hypothetical UPF0325 protein VV11856, UPF0325 protein VV1_1856 OS=Vibrio vulnificus GN=VV1_... Y2560_VIBVY - UPF0325 protein VV2560 OS=Vibrio vulnificus (strain YJ016) GN=VV2560 PE=3 SV=1 Y1856_VIBVU - UPF0325 protein VV1_1856 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1856 PE=3 SV=1	204.0	[0..1]	[126..1]
gi\|77972706, gi\|... - gi\|77972706\|ref\|ZP_00828265.1\| COG1196: Chromosome segregation ATPases [Yersinia frederiksenii ATCC ...	203.0	[0..1]	[127..1]
gi\|238784875, gi... - gi\|77957685\|ref\|ZP_00821734.1\| COG1196: Chromosome segregation ATPases [Yersinia bercovieri ATCC 439... gi\|77963179 - gi\|77963179\|ref\|ZP_00826991.1\| COG1196: Chromosome segregation ATPases [Yersinia mollaretii ATCC 439...	203.0	[0..1]	[127..1]
Y2321_VIBPA - UPF0325 protein VP2321 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP2321 PE=... Y2321_VIBPA, YN2... - (Q87MD5) Hypothetical UPF0325 protein VP2321, UPF0325 protein VP2321 OS=Vibrio parahaemolyticus GN=V... gi\|153840387, gi... - gi\|153840387\|ref\|ZP_01993054.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	202.0	[0..1]	[126..1]
gi\|84394417, gi\|... - gi\|84394417\|ref\|ZP_00993134.1\| hypothetical protein V12B01_21976 [Vibrio splendidus 12B01], gi\|84374... gi\|86146893, gi\|... - gi\|86146893\|ref\|ZP_01065212.1\| hypothetical protein MED222_21064 [Vibrio sp. MED222], gi\|85835345\|gb...	201.0	[0..1]	[126..1]
Y1947_SODGM - UPF0325 protein SG1947 OS=Sodalis glossinidius (strain morsitans) GN=SG1947 PE=3 SV=1	201.0	[0..1]	[127..1]
gi\|91223470, gi\|... - gi\|91223470\|ref\|ZP_01258735.1\| hypothetical protein V12G01_22428 [Vibrio alginolyticus 12G01], gi\|91...	201.0	[0..1]	[126..1]
gi\|77977752, gi\|... - gi\|77977752\|ref\|ZP_00833193.1\| COG1196: Chromosome segregation ATPases [Yersinia intermedia ATCC 299...	201.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPHLVGLGI NEPTQIERYS LRQEAHKDVL KIYFKKQKGE LFAKSVKFKY PRQIKNVLVD  60
   61 SGSHQYKEVT EINRNLTLVI DELNKITKPE VMGEVDVKQK ILNDLRHLEK VVASKIAEIE 120
  121 ADLQKLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits