YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4388836, gi\|4...
Organism:	Thermococcus kodakarensis
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4388836, gi|4....

Description	E-value	Query Range	Subject Range
SYD_PYRAB - Aspartyl-tRNA synthetase OS=Pyrococcus abyssi GN=aspS PE=3 SV=1 SYD_PYRAB - Aspartate--tRNA(Asp) ligase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=aspS PE=3 SV=1	472.0	[0..1]	[438..1]
SYD_PYRHO - Aspartyl-tRNA synthetase OS=Pyrococcus horikoshii GN=aspS PE=3 SV=1 SYD_PYRHO - Aspartate--tRNA(Asp) ligase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NB...	472.0	[0..1]	[438..1]
SYD_PYRKO - Aspartyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=aspS PE=1 SV=2 SYD_THEKO - Aspartate--tRNA(Asp) ligase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN...	470.0	[0..1]	[438..1]
gi\|1136773, gi\|2... - gi\|2129413\|pir\|\|JC4352 aspartate-tRNA ligase (EC 6.1.1.12) - Pyrococcus sp, gi\|1136773\|dbj\|BAA08115.... SYD_PYRKO - (Q52428) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS)	469.0	[0..1]	[438..1]
SYD_PYRFU - Aspartyl-tRNA synthetase OS=Pyrococcus furiosus GN=aspS PE=3 SV=1 SYD_PYRFU - Aspartate--tRNA(Asp) ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) G...	467.0	[0..1]	[438..1]
SYDND_METKA - Aspartate--tRNA(Asp/Asn) ligase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 1... SYD_METKA - Aspartyl-tRNA synthetase OS=Methanopyrus kandleri GN=aspS PE=3 SV=1	464.0	[0..1]	[438..1]
SYD_METJA - Aspartyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=aspS PE=3 SV=1 SYDND_METJA - Aspartate--tRNA(Asp/Asn) ligase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	452.0	[0..3]	[438..9]
SYDND_ARCFU - Aspartate--tRNA(Asp/Asn) ligase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JC... SYD_ARCFU - Aspartyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=aspS PE=3 SV=1	448.0	[0..6]	[438..4]
SYK_CARHZ - Lysine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) G...	440.0	[0..3]	[435..34]
SYD_METMA - Aspartyl-tRNA synthetase OS=Methanosarcina mazei GN=aspS PE=3 SV=1 SYDND_METMA - Aspartate--tRNA(Asp/Asn) ligase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1...	436.0	[0..2]	[438..6]

Back

Predicted Domain #1

Region A:
Residues: [1-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRTHYSSEI TEELNGQKVK VAGWVWEVKD LGGIKFLWIR DRDGIVQITA PKKKVDPELF  60
   61 KLIPKLRSED VVAVEGVVNF TPKAKLGFEI LPEKIVVLNR AETPLPLDPT GKVKAELDTR 120
  121 LNNRFMDLRR PEVMAIFKIR SSVFKAVRDF FHENGFIEIH TPKIIATATE GGTELFPMKY 180
  181 FEEDAFLAES PQLYKEIMMA SGLDRVYEIA PIFRAEEHNT TRHLNEAWSI DSEMAFIEDE 240
  241 EEVMSFLERL VAHAINYVRE HNAKELDILN FELEEPKLPF PRVSYDKALE ILGDLGKEIP 300
  301 WGEDIDTEGE RLLGKYMMEN ENAPLYFLYQ YPSEAKPFYI MKYDNKPEIC RAFDLEYRGV 360
  361 EISSGGQREH RHDILVEQIK EKGLNPESFE FYLKAFRYGM PPHGGFGLGA ERLIKQMLDL 420
  421 PNIREVILFP RDRRRLTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	1b8aA
Description:	Aspartyl-tRNA synthetase (AspRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits