YRC Public Data Repository - Protein Structure Prediction

Protein:	ISPT_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISPT_CAMJR.

Description	E-value	Query Range	Subject Range
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	347.0	[0..2]	[221..17]
gi\|167037632, gi... - gi\|76796454\|ref\|ZP_00778816.1\| Di-trans-poly-cis-decaprenylcistransferase [Thermoanaerobacter ethano... gi\|241903183, gi... - gi\|241903183\|ref\|ZP_04787910.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter brockii subsp....	330.0	[0..3]	[221..20]
gi\|170714048, gi... - gi\|170714048\|gb\|EDT26230.1\| undecaprenyl diphosphate synthase [Clostridium perfringens CPE str. F496... gi\|110676017, gi... - gi\|110801370\|ref\|YP_696383.1\| undecaprenyl diphosphate synthase [Clostridium perfringens ATCC 13124]... gi\|182380984, gi... - gi\|182380984\|gb\|EDT78463.1\| undecaprenyl diphosphate synthase [Clostridium perfringens NCTC 8239], g... ISPT_CLOPE - Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type A) GN=uppS PE=3 SV=1 gi\|169299227, gi... - gi\|169342721\|ref\|ZP_02863762.1\| undecaprenyl diphosphate synthase [Clostridium perfringens C str. JG... gi\|177907477, gi... - gi\|182627140\|ref\|ZP_02954855.1\| undecaprenyl diphosphate synthase [Clostridium perfringens D str. JG... gi\|110803535, gi... - gi\|110803535\|ref\|YP_698983.1\| undecaprenyl diphosphate synthase [Clostridium perfringens SM101], gi\|... gi\|168208113, gi... - gi\|170660606\|gb\|EDT13289.1\| undecaprenyl diphosphate synthase [Clostridium perfringens E str. JGS198... UPPS_CLOPE - Undecaprenyl pyrophosphate synthase OS=Clostridium perfringens GN=uppS PE=3 SV=1 gi\|170710581, gi... - gi\|170710581\|gb\|EDT22763.1\| undecaprenyl diphosphate synthase [Clostridium perfringens B str. ATCC 3...	329.0	[0..3]	[221..23]
ISPT1_NOSS1 - Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1 gi\|25314096 - pir\|\|AD2180 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120)	328.0	[0..3]	[222..20]
gi\|166854533, gi... - gi\|167040293\|ref\|YP_001663278.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X514], gi... gi\|242258359, gi... - gi\|242258359\|ref\|ZP_04803172.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X513], gi\|...	328.0	[0..3]	[221..20]
gi\|23128548, gi\|... - gi\|23128548\|ref\|ZP_00110393.1\| COG0020: Undecaprenyl pyrophosphate synthase [Nostoc punctiforme PCC ...	327.0	[0..3]	[222..20]
gi\|77405648, gi\|... - gi\|77405648\|ref\|ZP_00782736.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae H36B], gi... gi\|76787788, gi\|... - gi\|76787788\|ref\|YP_330469.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae A909], gi\|7... gi\|77412295, gi\|... - gi\|77412295\|ref\|ZP_00788610.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae CJB111], ...	327.0	[0..3]	[221..17]
gi\|209541304, gi... - gi\|209560103\|ref\|YP_002286575.1\| Undecaprenyl pyrophosphate synthetase [Streptococcus pyogenes NZ131... gi\|71904326, gi\|... - gi\|71904326\|ref\|YP_281129.1\| undecaprenyl pyrophosphate synthetase [Streptococcus pyogenes MGAS6180]... gi\|71854271, gi\|... - gi\|71911489\|ref\|YP_283039.1\| undecaprenyl pyrophosphate synthetase [Streptococcus pyogenes MGAS5005]... gi\|13622985, gi\|... - gi\|15675763\|ref\|NP_269937.1\| putative undecaprenyl pyrophosphate synthetase [Streptococcus pyogenes ... ISPT_STRP1 - Isoprenyl transferase OS=Streptococcus pyogenes serotype M1 GN=uppS PE=3 SV=1 UPPS_STRPY - (Q99XY1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP synthetase) (Di-trans-poly-cis-dec... gi\|94995166, gi\|... - gi\|94995166\|ref\|YP_603264.1\| Undecaprenyl pyrophosphate synthetase [Streptococcus pyogenes MGAS10750...	327.0	[0..2]	[222..15]
ISPT_ANAVT - Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2	327.0	[0..3]	[222..20]
gi\|67922228, gi\|... - gi\|67922228\|ref\|ZP_00515742.1\| Di-trans-poly-cis-decaprenylcistransferase [Crocosphaera watsonii WH ...	327.0	[0..2]	[222..50]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELKHLAVV MDGNRRWARA KGFLAKLGYS QGVKTMQKLM EVCMEENISN LSLFAFSTEN  60
   61 WKRPKDEIDF IFELLDRCLD EALEKFEKNN VRLRAIGDLS RLEDKVREKI TLVEEKTKHC 120
  121 DALCVNLAIS YGARDEIIRA AKRVIEKKLE LNEENLTQNL DLPLDVDLML RVGNAKRLSN 180
  181 FLLWQCSYAE IYFSETLFPS LTKREFKRII KEFRNRERTF GK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.522879
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	4.27318114514627	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	3.07573514495519	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
binding	0.458704366412361	bayes_pls_golite062009
transferase activity	0.273947729320601	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009
protein binding	0.11675780767527	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: