YRC Public Data Repository - Protein Structure Prediction

Protein:	TC754_ARATH
Organism:	Arabidopsis thaliana
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TC754_ARATH.

Description	E-value	Query Range	Subject Range
gi\|67853792, gi\|... - gi\|67924366\|ref\|ZP_00517797.1\| surface antigen (D15):Surface antigen variable number [Crocosphaera w...	239.0	[0..4]	[396..479]
gi\|23125699, gi\|... - gi\|23125699\|ref\|ZP_00107621.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Nostoc punc...	239.0	[0..4]	[396..444]
BAMA_SODGM - Outer membrane protein assembly factor BamA OS=Sodalis glossinidius (strain morsitans) GN=bamA PE=3 ...	233.0	[0..5]	[395..392]
gi\|77957697, gi\|... - gi\|77957697\|ref\|ZP_00821746.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia be...	230.0	[0..5]	[395..392]
gi\|238796617, gi... - gi\|77963167\|ref\|ZP_00826979.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia mo...	230.0	[0..5]	[395..392]
gi\|89075412, gi\|... - gi\|89075412\|ref\|ZP_01161829.1\| putative surface antigen [Photobacterium sp. SKA34], gi\|89048828\|gb\|E...	228.0	[0..5]	[396..393]
gi\|77977740, gi\|... - gi\|77977740\|ref\|ZP_00833181.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia in...	228.0	[0..5]	[395..392]
BAMA_PHOLU - Outer membrane protein assembly factor BamA OS=Photorhabdus luminescens GN=bamA PE=3 SV=1	228.0	[0..5]	[395..392]
gi\|75210500, gi\|... - gi\|75210500\|ref\|ZP_00710651.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia...	228.0	[0..5]	[395..392]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVKEAVRK IKSLVIPHAD EKDNGIVFEI KLNETDQRVE KWGLDPSLDF FEVTGNCNLG  60
   61 RPNSEGSNQS LMGSVTIRNI FNPKLDDLLS KIEYVRFLEA VKKPRNRTFK TSFFNSRKLS 120
  121 PVFTGGPGYE DLVPPMFVGR DCLKATITEN LTRQRELTYG VMFEEIITRD ENRRISENGL 180
  181 LLSPDGGISI NGPPTTLSGT GIDHIATLQA NITRDNTKLV NGAVVGEKNI FQVDQGLGIG 240
  241 NNFPLFNRHQ LSLTSFIQLK QVEEGSDKPQ PPVLVLHGRY GGCIGDLPSY DVFALGGPNS 300
  301 VRGYSMGELG AAKNILELGA EIRIPVKNTH VYAFAEHGND LGSSKDVKGN PTGLYRKMGH 360
  361 GSSYGLGVKL GMVRAEYTVR HNRGTGALFL RFGERY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2qdzA
Description:	No description for 2qdzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits