YRC Public Data Repository - Protein Structure Prediction

Protein:	SVIP_RAT
Organism:	Rattus norvegicus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SVIP_RAT.

Description	E-value	Query Range	Subject Range
SVIP_PONPY - Small VCP/p97-interacting protein - Pongo pygmaeus (Orangutan) SVIP_PONAB - Small VCP/p97-interacting protein OS=Pongo abelii GN=SVIP PE=3 SV=1 gi\|114636610 - gi\|114636610\|ref\|XP_001173949.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] SVIP - small VCP/p97-interacting protein gi\|109106995 - gi\|109106995\|ref\|XP_001091376.1\| PREDICTED: similar to Small VCP/p97-interacting protein [Macaca mul...	94.0	[0..1]	[76..1]
SVIP_MOUSE - Small VCP/p97-interacting protein OS=Mus musculus GN=Svip PE=3 SV=1	91.0	[0..1]	[76..1]
gi\|157012896, gi... - gi\|58396432\|ref\|XP_321891.2\| ENSANGP00000013901 [Anopheles gambiae str. PEST], gi\|55234084\|gb\|EAA017...	85.0	[0..19]	[74..233]
gi\|115970631, gi... - gi\|115970631\|ref\|XP_001177020.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocent...	77.0	[0..1]	[76..1]
gi\|76162454 - gi\|76162454\|gb\|AAX30289.2\| SJCHGC02765 protein [Schistosoma japonicum]	76.0	[0..17]	[76..27]
gi\|108878667, gi... - gi\|157110515\|ref\|XP_001651135.1\| hypothetical protein AaeL_AAEL005601 [Aedes aegypti], gi\|108878667\|...	74.0	[0..1]	[74..1]
CG32039-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG32039 (CG32039, FBgn0052039). It is a prote...	67.0	[0..1]	[76..1]
gi\|110750729 - gi\|110750729\|ref\|XP_001121005.1\| PREDICTED: similar to CG32039-PA [Apis mellifera]	67.0	[0..3]	[65..4]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCFPCPAE SAPPSPSPEE KRAKLAEAAE RRQKEAASRG ILDIQSVEAK KKKKEQLEKQ  60
   61 METSGPPAGG LRWTVS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.910	a.7.6	Ribosomal protein S20
View	Download	0.734	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.731	a.7.6	Ribosomal protein S20
View	Download	0.619	a.7.6	Ribosomal protein S20
View	Download	0.617	a.7.6	Ribosomal protein S20

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits