YRC Public Data Repository - Protein Structure Prediction

Protein:	SIRA_SALPA, TUSA...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIRA_SALPA, TUSA....

Description	E-value	Query Range	Subject Range
gi\|224585370, gi... - gi\|224585370\|ref\|YP_002639169.1\| hypothetical protein SPC_3647 [Salmonella enterica subsp. enterica ... gi\|205360358, gi... - gi\|205360358\|ref\|ZP_02682666.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205344517, gi... - gi\|205359568\|ref\|ZP_02830605.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205359045, gi... - gi\|205359045\|ref\|ZP_02666662.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205358594, gi... - gi\|205358594\|ref\|ZP_02657783.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205357618, gi... - gi\|205357618\|ref\|ZP_02571893.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205356888, gi... - gi\|205356888\|ref\|ZP_02342963.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204322141, gi... - gi\|204928708\|ref\|ZP_03219907.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|200388605, gi... - gi\|200388605\|ref\|ZP_03215217.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197937325, gi... - gi\|198242809\|ref\|YP_002217537.1\| hypothetical protein SeD_A3950 [Salmonella enterica subsp. enterica... gi\|197291274, gi... - gi\|197300670\|ref\|ZP_02660230.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197240639, gi... - gi\|197262384\|ref\|ZP_03162458.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197249921, gi... - gi\|197249921\|ref\|YP_002148501.1\| hypothetical protein SeAg_B3780 [Salmonella enterica subsp. enteric... gi\|195632354, gi... - gi\|195873796\|ref\|ZP_02699033.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194710928, gi... - gi\|194735426\|ref\|YP_002116513.1\| hypothetical protein SeSA_A3770 [Salmonella enterica subsp. enteric... gi\|194457962, gi... - gi\|194471598\|ref\|ZP_03077582.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194406049, gi... - gi\|194447745\|ref\|YP_002047603.1\| hypothetical protein SeHA_C3890 [Salmonella enterica subsp. enteric... gi\|194444607, gi... - gi\|194444607\|ref\|YP_002042823.1\| hypothetical protein SNSL254_A3847 [Salmonella enterica subsp. ente... gi\|161616626, gi... - gi\|161616626\|ref\|YP_001590591.1\| hypothetical protein SPAB_04443 [Salmonella enterica subsp. enteric... gi\|62182077, gi\|... - gi\|62182077\|ref\|YP_218494.1\| hypothetical protein SC3507 [Salmonella enterica subsp. enterica serova...	2.0E-25	[1..81]	[31..111]
gi\|89104192, gi\|... - gi\|89104192\|ref\|ZP_01176742.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|145212384, gi... - gi\|145600688\|ref\|YP_001164764.1\| cell developmental protein SirA [Yersinia pestis Pestoides F], gi\|1... gi\|108810309, gi... - gi\|108810309\|ref\|YP_646076.1\| cell developmental protein SirA [Yersinia pestis Nepal516], gi\|1087739... gi\|108806199, gi... - gi\|108806199\|ref\|YP_650115.1\| cell developmental protein SirA [Yersinia pestis Antiqua], gi\|10877811... gi\|45442979, gi\|... - gi\|45442979\|ref\|NP_994518.1\| hypothetical protein YP_3227 [Yersinia pestis biovar Microtus str. 9100... gi\|21957098, gi\|... - gi\|22124324\|ref\|NP_667747.1\| hypothetical protein y0409 [Yersinia pestis KIM], gi\|21957098\|gb\|AAM839... gi\|166213499, gi... - gi\|166213499\|ref\|ZP_02239534.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. B4200300... gi\|166011690, gi... - gi\|166011690\|ref\|ZP_02232588.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. E1979001... gi\|166961101, gi... - gi\|167420972\|ref\|ZP_02312725.1\| sulfurtransferase TusA [Yersinia pestis biovar Orientalis str. MG05-... gi\|167401858, gi... - gi\|167401858\|ref\|ZP_02307346.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. UG05-045... gi\|167054819, gi... - gi\|167426300\|ref\|ZP_02318053.1\| sulfurtransferase TusA [Yersinia pestis biovar Mediaevalis str. K197... gi\|162421779, gi... - gi\|77633440\|ref\|ZP_00795571.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|165926318, gi... - gi\|165926318\|ref\|ZP_02222150.1\| sulfurtransferase TusA [Yersinia pestis biovar Orientalis str. F1991...	2.0E-25	[1..80]	[48..127]
TUSA_ECO7I - Sulfurtransferase TusA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tusA PE=3 SV=1 TUSA_ECO5E - Sulfurtransferase TusA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tusA PE=3 SV=1 TUSA_ECOSE - Sulfurtransferase TusA OS=Escherichia coli (strain SE11) GN=tusA PE=3 SV=1 TUSA_ECO27 - Sulfurtransferase TusA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tusA PE=3 SV=1 gi\|217320474, gi... - gi\|217324253\|ref\|ZP_03440337.1\| sulfurtransferase TusA [Escherichia coli O157:H7 str. TW14588], gi\|2... TUSA_ECO8A - Sulfurtransferase TusA OS=Escherichia coli O8 (strain IAI1) GN=tusA PE=3 SV=1 TUSA_ECO45 - Sulfurtransferase TusA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tusA PE=3 SV=1 TUSA_ECO81 - Sulfurtransferase TusA OS=Escherichia coli O81 (strain ED1a) GN=tusA PE=3 SV=1 TUSA_ECO55 - Sulfurtransferase TusA OS=Escherichia coli (strain 55989 / EAEC) GN=tusA PE=3 SV=1 gi\|24053947, gi\|... - gi\|24114730\|ref\|NP_709240.1\| cell developmental protein SirA [Shigella flexneri 2a str. 301], gi\|240... TUSA_ECOL6 - Sulfurtransferase TusA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tusA PE=3 S... gi\|124500452, gi... - gi\|124528611\|ref\|ZP_01699889.1\| SirA family protein [Escherichia coli B], gi\|124500452\|gb\|EAY47925.1... gi\|30065253, gi\|... - gi\|30065253\|ref\|NP_839424.1\| cell developmental protein SirA [Shigella flexneri 2a str. 2457T], gi\|3... TUSA_ECO57 - Sulfurtransferase TusA OS=Escherichia coli O157:H7 GN=tusA PE=1 SV=1 EG12216 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase / Sulfurtransferase, 2-thiolation of mnm(5)s(2)U3... gi\|12518129, gi\|... - gi\|15803982\|ref\|NP_290018.1\| cell developmental protein SirA [Escherichia coli O157:H7 EDL933], gi\|1... SIRA_ECOLI, TUSA... - Sulfurtransferase tusA (EC 2.8.1.-) (tRNA 2-thiouridine synthesizing protein A) - Escherichia coli, ... SIRA_ECOL6, TUSA... - Sulfurtransferase TusA OS=Escherichia coli O6 GN=tusA PE=3 SV=1, (P0A891) Protein sirA gi\|188488635, gi... - gi\|75516065\|ref\|ZP_00738183.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... TUSA_SHISS - Sulfurtransferase TusA OS=Shigella sonnei (strain Ss046) GN=tusA PE=3 SV=1 gi\|191170392, gi... - gi\|75242733\|ref\|ZP_00726477.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|193061734, gi... - gi\|75260243\|ref\|ZP_00731511.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|85676573, gi\|... - gi\|89110542\|ref\|AP_004322.1\| conserved hypothetical protein required for cell growth [Escherichia co... TUSA_SHIDS - Sulfurtransferase TusA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tusA PE=3 SV=1 TUSA_SHIBS - Sulfurtransferase TusA OS=Shigella boydii serotype 4 (strain Sb227) GN=tusA PE=3 SV=1 TUSA_SHIB3 - Sulfurtransferase TusA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tusA PE=3 SV=1 gi\|189402701, gi... - gi\|189402701\|ref\|ZP_02790840.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4486], gi\|18... TUSA_ECO24 - Sulfurtransferase TusA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tusA PE=3 SV=1 gi\|189369899, gi... - gi\|189403747\|ref\|ZP_02784515.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4501], gi\|18... gi\|189404660, gi... - gi\|189404660\|ref\|ZP_02810298.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC869], gi\|189... gi\|83588668, gi\|... - gi\|83588668\|ref\|ZP_00927292.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|189405513, gi... - gi\|189405513\|ref\|ZP_02822263.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC508], gi\|189... gi\|75226951, gi\|... - gi\|75226951\|ref\|ZP_00713827.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|195934964 - gi\|195934964\|ref\|ZP_03080346.1\| cell developmental protein SirA [Escherichia coli O157:H7 str. EC402... gi\|192955173, gi... - gi\|75237069\|ref\|ZP_00721125.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|208728743, gi... - gi\|208808942\|ref\|ZP_03251279.1\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4206], gi\|20... TUSA_ECOHS - Sulfurtransferase TusA OS=Escherichia coli O9:H4 (strain HS) GN=tusA PE=3 SV=1 gi\|208812196, gi... - gi\|208812196\|ref\|ZP_03253525.1\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|194414948, gi... - gi\|75211835\|ref\|ZP_00711899.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|208738465, gi... - gi\|208818342\|ref\|ZP_03258662.1\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4042], gi\|20... sp\|B7UL22\|TUSA_ECO27 - Sulfurtransferase tusA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tusA PE=3 SV=1 TUSA_ECODH - Sulfurtransferase TusA OS=Escherichia coli (strain K12 / DH10B) GN=tusA PE=3 SV=1 gi\|187775656, gi... - gi\|187775656\|ref\|ZP_02797628.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4196], gi\|18... gi\|188024522, gi... - gi\|188024522\|ref\|ZP_02772058.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4113], gi\|18... gi\|189002211, gi... - gi\|189010071\|ref\|ZP_02804576.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4076], gi\|18... gi\|189401837, gi... - gi\|189401837\|ref\|ZP_02778245.2\| sulfurtransferase TusA [Escherichia coli O157:H7 str. EC4401], gi\|18... gi\|254594790, gi... - gi\|254795390\|ref\|YP_003080227.1\| sulfur transfer protein [Escherichia coli O157:H7 str. TW14359], gi... gi\|253975295, gi... - gi\|254163394\|ref\|YP_003046502.1\| cell developmental protein SirA [Escherichia coli B str. REL606], g... gi\|226839144, gi... - gi\|254038638\|ref\|ZP_04872694.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683914... gi\|253771701, gi... - gi\|254290144\|ref\|YP_003055892.1\| cell developmental protein SirA [Escherichia coli BL21(DE3)], gi\|25... gi\|242378991, gi... - gi\|251786718\|ref\|YP_003001022.1\| hypothetical protein B21_03272 [Escherichia coli BL21], gi\|24237899... TUSA_ECOBW - Sulfurtransferase TusA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=tusA PE=3 SV=1 gi\|227883616, gi... - gi\|227883616\|ref\|ZP_04001421.1\| redox protein [Escherichia coli 83972], gi\|227839495\|gb\|EEJ49961.1\| ... EG12216 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase / Sulfurtransferase, 2-thiolation of mnm(5)s(2)U3... TUSA_ECOUT - Sulfurtransferase TusA OS=Escherichia coli (strain UTI89 / UPEC) GN=tusA PE=3 SV=1 gi\|15833573, gi\|... - gi\|15833573\|ref\|NP_312346.1\| sulfur transfer protein SirA [Escherichia coli O157:H7 str. Sakai], gi\|... TUSA_SHIFL - Sulfurtransferase TusA OS=Shigella flexneri GN=tusA PE=3 SV=1 TUSA_ECOLC - Sulfurtransferase TusA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tusA PE=3 SV=1 TUSA_ECOL5 - Sulfurtransferase TusA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tusA PE=3 SV=1 TUSA_SHIF8 - Sulfurtransferase TusA OS=Shigella flexneri serotype 5b (strain 8401) GN=tusA PE=3 SV=1	1.0E-24	[1..80]	[1..80]
TUSA_YERPS - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=tusA PE=3 SV=1 gi\|218930824, gi... - gi\|218930824\|ref\|YP_002348699.1\| sulfur transfer protein SirA [Yersinia pestis CO92], gi\|16123956\|re... TUSA_YERPS, SIRA... - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis GN=tusA PE=3 SV=1, (Q66FX1) Protein sirA TUSA_YERPE - Sulfurtransferase TusA OS=Yersinia pestis GN=tusA PE=3 SV=1 gi\|161484896 - gi\|161484896\|ref\|NP_667747.2\| cell developmental protein SirA [Yersinia pestis KIM] gi\|161511321 - gi\|161511321\|ref\|NP_994518.2\| cell developmental protein SirA [Yersinia pestis biovar Microtus str. ... gi\|167468876 - gi\|167468876\|ref\|ZP_02333580.1\| sulfurtransferase TusA [Yersinia pestis FV-1] gi\|229900072, gi... - gi\|229900072\|ref\|ZP_04515209.1\| sulfur transfer protein [Yersinia pestis biovar Orientalis str. Indi... TUSA_YERPY - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tusA PE=3 SV=1 gi\|229837149, gi... - gi\|229837149\|ref\|ZP_04457314.1\| sulfur transfer protein [Yersinia pestis Pestoides A], gi\|229706092\|... TUSA_YERPB - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tusA PE=3 SV=1 gi\|229900482, gi... - gi\|229900482\|ref\|ZP_04515611.1\| sulfur transfer protein [Yersinia pestis Nepal516], gi\|229682501\|gb\|... gi\|229358045 - gi\|229358045\|ref\|YP_650115.2\| cell developmental protein SirA [Yersinia pestis Antiqua] gi\|229270462 - gi\|229270462\|ref\|YP_001605161.2\| cell developmental protein SirA [Yersinia pestis Angola] TUSA_YERP3 - Sulfurtransferase TusA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tusA PE=3 S... gi\|149289427, gi... - gi\|153997121\|ref\|ZP_02022254.1\| sulfurtransferase [Yersinia pestis CA88-4125], gi\|149289427\|gb\|EDM39...	1.0E-24	[1..80]	[1..80]
gi\|77960572, gi\|... - gi\|77960572\|ref\|ZP_00824438.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	3.0E-24	[1..80]	[1..80]
gi\|194431061, gi... - gi\|83571605\|ref\|ZP_00923045.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	4.0E-24	[1..80]	[1..80]
gi\|238784423, gi... - gi\|77957883\|ref\|ZP_00821927.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	8.0E-24	[1..80]	[1..80]
TUSA_SODGM - Sulfurtransferase TusA OS=Sodalis glossinidius (strain morsitans) GN=tusA PE=3 SV=1	1.0E-23	[1..80]	[1..80]
gi\|238789404, gi... - gi\|77973653\|ref\|ZP_00829199.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati...	1.0E-23	[1..80]	[1..80]
gi\|55247150, gi\|... - gi\|58374965\|ref\|XP_306429.2\| ENSANGP00000023105 [Anopheles gambiae str. PEST], gi\|55247150\|gb\|EAA458...	2.0E-23	[1..81]	[1..81]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLFSSPDH TLDALGLRCP EPVMMVRKTV RNMQTGETLL IIADDPATTR DIPGFCTFME  60
   61 HDLLAQETEG LPYRYLLRKA H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1dcjA
Description:	SirA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits