YRC Public Data Repository - Protein Structure Prediction

Protein:	RS5_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS5_CAMJR.

Description	E-value	Query Range	Subject Range
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1	239.0	[0..1]	[146..79]
gi\|125812068, gi... - gi\|47086117\|ref\|NP_998444.1\| ribosomal protein S2 [Danio rerio], gi\|45768675\|gb\|AAH67645.1\| Ribosoma...	238.0	[0..1]	[146..80]
gi\|109149636 - gi\|109149636\|ref\|XP_001114889.1\| PREDICTED: similar to 40S ribosomal protein S2 [Macaca mulatta]	237.0	[0..1]	[146..22]
gi\|51258855, gi\|... - gi\|89267412\|emb\|CAJ83183.1\| ribosomal protein S2 [Xenopus tropicalis], gi\|56118428\|ref\|NP_001007869....	237.0	[0..1]	[146..81]
gi\|125857086, gi... - gi\|33417132\|gb\|AAH56066.1\| Rps2e protein [Xenopus laevis], gi\|148232341\|ref\|NP_001080882.1\| ribosoma...	236.0	[0..1]	[146..81]
gi\|73962612 - gi\|73962612\|ref\|XP_860827.1\| PREDICTED: similar to 40S ribosomal protein S2 isoform 3 [Canis familia...	236.0	[0..1]	[146..60]
gi\|74186763 - gi\|74186763\|dbj\|BAE34836.1\| unnamed protein product [Mus musculus]	236.0	[0..1]	[146..94]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	235.0	[0..1]	[146..94]
gi\|50755669 - gi\|50755669\|ref\|XP_414845.1\| PREDICTED: similar to 40S ribosomal protein S2 [Gallus gallus]	235.0	[0..1]	[146..87]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKYNREEFE EVIVDIGRVT KVVKGGRRFR FTALVIVGNR KGLVGVGYGK AKEVPDAIRK  60
   61 AVDDAFKNIV EVKTKGSTIA HDVEVKYNAS RILLKPASEG TGVIAGGSTR PIVELAGIKD 120
  121 ILTKSLGSNN SANVVRATIK ALTMLKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1dv4E
Description:	30S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits