YRC Public Data Repository - Protein Structure Prediction

Protein:	RS2_LACJO
Organism:	Lactobacillus johnsonii
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS2_LACJO.

Description	E-value	Query Range	Subject Range
gi\|116629458, gi... - gi\|116629458\|ref\|YP_814630.1\| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi\|116095...	351.0	[0..1]	[261..11]
RS2_PEDAC - 30S ribosomal protein S2 OS=Pediococcus acidilactici GN=rpsB PE=3 SV=1	332.0	[0..1]	[261..1]
RS2_PEDPA - 30S ribosomal protein S2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsB PE=3 SV=1	330.0	[0..1]	[261..1]
gi\|254045811, gi... - gi\|254556884\|ref\|YP_003063301.1\| 30S ribosomal protein S2 [Lactobacillus plantarum JDM1], gi\|2540458... RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum GN=rpsB PE=3 SV=1 RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rp... gi\|227856874, gi... - gi\|227894840\|ref\|ZP_04012645.1\| 30S ribosomal protein S2 [Lactobacillus plantarum subsp. plantarum A...	329.0	[0..1]	[260..1]
gi\|53688528 - gi\|53688528\|ref\|ZP_00110656.2\| COG0052: Ribosomal protein S2 [Nostoc punctiforme PCC 73102]	327.0	[0..1]	[257..55]
gi\|227187676, gi... - gi\|227534920\|ref\|ZP_03964969.1\| 30S ribosomal protein S2 [Lactobacillus paracasei subsp. paracasei A... RS2_LACCB - 30S ribosomal protein S2 OS=Lactobacillus casei (strain BL23) GN=rpsB PE=3 SV=1 gi\|239631337, gi... - gi\|239631337\|ref\|ZP_04674368.1\| 30S ribosomal protein S2 [Lactobacillus paracasei subsp. paracasei 8... RS2_LACC3 - 30S ribosomal protein S2 OS=Lactobacillus casei (strain ATCC 334) GN=rpsB PE=3 SV=1	325.0	[0..1]	[259..1]
gi\|25294462 - pir\|\|AH2404 30S ribosomal protein S2 [imported] - Nostoc sp. (strain PCC 7120) RS2_NOSS1 - 30S ribosomal protein S2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsB PE=3 SV=1	324.0	[0..1]	[261..1]
gi\|26106512, gi\|... - gi\|26246115\|ref\|NP_752154.1\| 30S ribosomal protein S2 [Escherichia coli CFT073], gi\|26106512\|gb\|AAN7... gi\|91209238, gi\|... - gi\|91209238\|ref\|YP_539224.1\| 30S ribosomal protein S2 [Escherichia coli UTI89], gi\|91070812\|gb\|ABE05...	324.0	[0..1]	[241..67]
RS2_LACAC - 30S ribosomal protein S2 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=rp... RS2_LACAC - 30S ribosomal protein S2 OS=Lactobacillus acidophilus GN=rpsB PE=3 SV=1 gi\|227868207, gi... - gi\|227904188\|ref\|ZP_04021993.1\| 30S ribosomal protein S2 [Lactobacillus acidophilus ATCC 4796], gi\|2...	324.0	[0..3]	[261..4]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVTMKQLL EAGVHFGHQT RRWDPKMAPY IFTQRNGIYI IDLQKTIKML DDAYNYVKAV  60
   61 AQDGGVFLFV GTKKQAQDAV KEEATRAGQY YVNQRWLGGT LTNWTTIQSR VKRLKELKQM 120
  121 SEDGTFDVLP KKEVALLTKE MEKLERFLGG IEDMPRIPDV MFVVDPKKEK IAVHEANILG 180
  181 IPVVAMVDTN TDPDPIDVVI PANDDAIRAI RLISGAMADA IIEGKQGQDD SEDVEKEMAD 240
  241 KAAAEDDEEE SIEVVVEKSE D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.154902
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.68569821712377	bayes_pls_golite062009
structural molecule activity	9.23086340425923	bayes_pls_golite062009
RNA binding	0.825542354503353	bayes_pls_golite062009
binding	0.775544224160057	bayes_pls_golite062009
nucleic acid binding	0.588158477256084	bayes_pls_golite062009
protein binding	0.156148644279823	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: