YRC Public Data Repository - Protein Structure Prediction

Protein:	RR12_PHYPA
Organism:	Physcomitrella patens
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RR12_PHYPA.

Description	E-value	Query Range	Subject Range
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	191.0	[0..1]	[123..42]
gi\|74275829, gi\|... - gi\|75437463\|ref\|ZP_00733433.1\| 30S ribosomal protein S12 [Actinobacillus succinogenes 130Z], gi\|7427...	190.0	[0..1]	[123..19]
gi\|69216533 - gi\|69216533\|gb\|AAZ03932.1\| ribosomal protein S12 [Ginkgo biloba]	188.0	[0..1]	[123..1]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	187.0	[0..1]	[123..13]
RS12_VIBCB - 30S ribosomal protein S12 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpsL PE=3 SV=1 gi\|163802784, gi... - gi\|163802784\|ref\|ZP_02196674.1\| 30S ribosomal protein S12 [Vibrio campbellii AND4], gi\|159173491\|gb\|... RS12_VIBPA - 30S ribosomal protein S12 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpsL PE... gi\|90437894, gi\|... - gi\|90580823\|ref\|ZP_01236625.1\| 30S ribosomal protein S12 [Vibrio angustum S14], gi\|90437894\|gb\|EAS63... RS12_VIBPA - 30S ribosomal protein S12 OS=Vibrio parahaemolyticus GN=rpsL PE=3 SV=1 gi\|89049064, gi\|... - gi\|89075242\|ref\|ZP_01161673.1\| 30S ribosomal protein S12 [Photobacterium sp. SKA34], gi\|89049064\|gb\|...	187.0	[0..1]	[123..1]
RR12_ATRBE - 30S ribosomal protein S12, chloroplastic OS=Atropa belladonna GN=rps12-A PE=3 SV=1	186.0	[0..1]	[123..1]
RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain CMCP6) GN=rpsL PE=3 SV=1 RS12_VIBVY - 30S ribosomal protein S12 OS=Vibrio vulnificus (strain YJ016) GN=rpsL PE=3 SV=1 RS12_VIBVU - 30S ribosomal protein S12 OS=Vibrio vulnificus GN=rpsL PE=3 SV=1	186.0	[0..1]	[123..1]
RS12_SODGM - 30S ribosomal protein S12 OS=Sodalis glossinidius (strain morsitans) GN=rpsL PE=3 SV=1	185.0	[0..1]	[123..1]
gi\|33575063, gi\|... - gi\|33599017\|ref\|NP_886577.1\| 30S ribosomal protein S12 [Bordetella bronchiseptica RB50], gi\|33575063...	185.0	[0..1]	[123..22]
RR12_HUPLU - 30S ribosomal protein S12, chloroplastic OS=Huperzia lucidula GN=rps12 PE=3 SV=2	185.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIQQLIRN RRQPIENRTK SPALRGCPQR RGVCTRVYTV TPKKPNSALR KVARVRLTSG  60
   61 FEITAYIPGI GHNLQEHSVV LVRGGRVKDL PGVRYHIVRG TLDAVGVKDR QQGRSKYGVK 120
  121 KPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	1vs5L
Description:	No description for 1vs5L was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits