YRC Public Data Repository - Protein Structure Prediction

Protein:	RPOM_SULAC
Organism:	Sulfolobus acidocaldarius
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPOM_SULAC.

Description	E-value	Query Range	Subject Range
gi\|15623381, gi\|... - gi\|15922591\|ref\|NP_378260.1\| putative DNA-directed RNA polymerase subunit M [Sulfolobus tokodaii str...	121.0	[0..1]	[111..1]
gi\|46438863, gi\|... - gi\|68477862\|ref\|XP_717083.1\| hypothetical protein CaO19.12820 [Candida albicans SC5314], gi\|68477699... orf19.12820, orf... - RPC11 CGDID:CAL0004345 Assembly 19, Contig19-10225 (127260, 127595) CDS, translated using codon tabl...	121.0	[0..1]	[109..2]
gi\|190404984 - gi\|190404984\|gb\|EDV08251.1\| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Saccharomyces cer... RPC11 - RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for terminat... ORFP:3914 - YDR045C, Contig c130 7458-7790 reverse complement RPC10_YEAST - DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|151942036 - gi\|151942036\|gb\|EDN60392.1\| RNA polymerase C [Saccharomyces cerevisiae YJM789]	120.0	[0..1]	[109..2]
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	119.0	[0..1]	[109..26]
gi\|7447278, gi\|6... - gi\|7447278\|pir\|\|S33694 transcription elongation factor tfIIs - Sulfolobus acidocaldarius, gi\|642273\|...	118.0	[0..1]	[111..1]
gi\|58269278, gi\|... - gi\|58269278\|ref\|XP_571795.1\| RNA polymerase III smallest subunit [Cryptococcus neoformans var. neofo...	117.0	[0..1]	[109..1]
gi\|134090332, gi... - gi\|50256738\|gb\|EAL19458.1\| hypothetical protein CNBG4050 [Cryptococcus neoformans var. neoformans B-...	117.0	[0..1]	[109..1]
gi\|49645048, gi\|... - gi\|49645048\|emb\|CAG98620.1\| KLLA0F18568p [Kluyveromyces lactis], gi\|38636481\|emb\|CAD58583.1\| RNA pol... gi\|49645048, gi\|... - gi\|50311767\|ref\|XP_455912.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645048\|emb\|CAG9862...	116.0	[0..1]	[109..2]
gi\|44985907 - gi\|44985907\|gb\|AAS54518.1\| AGR029Wp [Ashbya gossypii ATCC 10895] gi\|45201124, gi\|... - gi\|45201124\|ref\|NP_986694.1\| AGR029Wp [Ashbya gossypii ATCC 10895], gi\|44985907\|gb\|AAS54518.1\| AGR02...	116.0	[0..1]	[109..2]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFCPKCGSM MMPRKENGKT VYKCSKCGYI DTENQKEAKI TTVIKHSAKE KTLVLESDMP  60
   61 KTGVQLTRGI SCPSCGNDEA YFWILQTRSA DEPATRFYKC TKCGKVWREY E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.09691
Match:	1pqvS
Description:	RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits