YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPA_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_CAMJR.

Description	E-value	Query Range	Subject Range
RNPA_GEOKA - Ribonuclease P protein component OS=Geobacillus kaustophilus (strain HTA426) GN=rnpA PE=3 SV=1 gi\|229331359, gi... - gi\|229497933\|ref\|ZP_04391632.1\| ribonuclease P protein component [Geobacillus sp. Y412MC52], gi\|2293... RNPA_GEOKA - Ribonuclease P protein component OS=Geobacillus kaustophilus GN=rnpA PE=3 SV=1	111.0	[0..1]	[108..1]
RNPA_BACCN - Ribonuclease P protein component OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / N...	109.0	[0..1]	[106..1]
RNPA_BACHD - Ribonuclease P protein component OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... RNPA_BACHD - Ribonuclease P protein component OS=Bacillus halodurans GN=rnpA PE=3 SV=1	108.0	[0..1]	[108..1]
RNPA_SODGM - Ribonuclease P protein component OS=Sodalis glossinidius (strain morsitans) GN=rnpA PE=3 SV=1	106.0	[0..2]	[103..7]
gi\|72496269, gi\|... - gi\|73663754\|ref\|YP_302535.1\| ribonuclease P [Staphylococcus saprophyticus subsp. saprophyticus ATCC ...	105.0	[0..3]	[107..4]
RNPA_OCEIH - Ribonuclease P protein component OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 39... RNPA_OCEIH - Ribonuclease P protein component OS=Oceanobacillus iheyensis GN=rnpA PE=3 SV=1	105.0	[0..1]	[108..1]
gi\|228936767, gi... - gi\|228936767\|ref\|ZP_04099558.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar and... gi\|228829212, gi... - gi\|228930493\|ref\|ZP_04093493.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pon... gi\|229094598, gi... - gi\|229094598\|ref\|ZP_04225665.1\| Ribonuclease P protein component [Bacillus cereus Rock3-42], gi\|2286... gi\|228949209, gi... - gi\|228949209\|ref\|ZP_04111477.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar mon... gi\|229187716, gi... - gi\|229187716\|ref\|ZP_04314852.1\| Ribonuclease P protein component [Bacillus cereus BGSC 6E1], gi\|2285... gi\|229124990, gi... - gi\|229124990\|ref\|ZP_04254164.1\| Ribonuclease P protein component [Bacillus cereus 95/8201], gi\|22865... gi\|118480514, gi... - gi\|118480514\|ref\|YP_897665.1\| ribonuclease P [Bacillus thuringiensis str. Al Hakam], gi\|118419739\|gb... gi\|65317468 - gi\|65317468\|ref\|ZP_00390427.1\| COG0594: RNase P protein component [Bacillus anthracis str. A2012] gi\|228918099, gi... - gi\|228918099\|ref\|ZP_04081627.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pul...	105.0	[0..1]	[106..5]
gi\|71910021, gi\|... - gi\|71910021\|ref\|YP_281571.1\| ribonuclease P [Streptococcus pyogenes MGAS5005], gi\|71852803\|gb\|AAZ508... RNPA_STRPM - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rnpA PE... RNPA_STRPZ - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rnpA PE=3 ... RNPA_STRPQ - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rnpA PE=3 S... RNPA_STRP3 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M3 GN=rnpA PE=3 SV=1 RNPA_STRP6 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M6 GN=rnpA PE=3 SV=1 RNPA_STRP8 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M18 GN=rnpA PE=3 SV=1 RNPA_STRP3 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS31... RNPA_STRP8 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rnpA PE... RNPA_STRP1 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M1 GN=rnpA PE=3 SV=2 RNPA_STRPM - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M28 GN=rnpA PE=3 SV=1 RNPA_STRPD - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rnpA PE... RNPA_STRPF - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rnpA PE... RNPA_STRP6 - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10...	104.0	[0..1]	[108..1]
RNPA_STRPC - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rnpA PE... RNPA_STRPB - Ribonuclease P protein component OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rnpA PE...	104.0	[0..1]	[108..1]
gi\|47018418, gi\|... - gi\|47093224\|ref\|ZP_00230997.1\| ribonuclease P protein component [Listeria monocytogenes str. 4b H785... RNPA_LISMC - Ribonuclease P protein component OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rnpA PE... RNPA_LISMF - Ribonuclease P protein component OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rnpA PE=3 S... gi\|254824782 - gi\|254824782\|ref\|ZP_05229783.1\| ribonuclease P [Listeria monocytogenes FSL J1-194] RNPA_LISMO - Ribonuclease P protein component OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e... gi\|254877578 - gi\|254877578\|ref\|ZP_05250288.1\| ribonuclease P [Listeria monocytogenes FSL J2-071] gi\|47014395, gi\|... - gi\|47097240\|ref\|ZP_00234802.1\| ribonuclease P protein component [Listeria monocytogenes str. 1/2a F6... gi\|254930871 - gi\|254930871\|ref\|ZP_05264230.1\| ribonuclease P [Listeria monocytogenes HPB2262] gi\|255520072 - gi\|255520072\|ref\|ZP_05387309.1\| ribonuclease P [Listeria monocytogenes FSL J1-175] gi\|224503079 - gi\|224503079\|ref\|ZP_03671386.1\| ribonuclease P [Listeria monocytogenes FSL R2-561] gi\|254899688, gi... - gi\|254899688\|ref\|ZP_05259612.1\| ribonuclease P [Listeria monocytogenes J0161], gi\|153184350\|ref\|ZP_0... gi\|127763677, gi... - gi\|254913109\|ref\|ZP_05263121.1\| ribonuclease P [Listeria monocytogenes J2818], gi\|153192640\|ref\|ZP_0... gi\|133725977, gi... - gi\|153169029\|ref\|ZP_01928768.1\| ribonuclease P protein component [Listeria monocytogenes FSL N1-017]... RNPA_LISMC - Ribonuclease P protein component OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rnpA PE... gi\|153176160, gi... - gi\|254827422\|ref\|ZP_05232109.1\| ribonuclease P [Listeria monocytogenes FSL N3-165], gi\|153176160\|ref... gi\|133731547, gi... - gi\|153181029\|ref\|ZP_01933996.1\| ribonuclease P protein component [Listeria monocytogenes F6900], gi\|... RNPA_LISMO - Ribonuclease P protein component OS=Listeria monocytogenes GN=rnpA PE=3 SV=1	104.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNFDKFSTN EEFSSVYKIG KKWHCEGVII FYLNSYEKKI AVVASKKVGK AVVRNRSKRI  60
   61 LRALFAKFER YLRDGKYIFV AKNEITELSF SRLEKNLKWG LKKLECFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1a6fA
Description:	RNASE P PROTEIN FROM BACILLUS SUBTILIS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits