YRC Public Data Repository - Protein Structure Prediction

Protein:	RL31_SYNP6
Organism:	Synechococcus elongatus PCC 6301
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL31_SYNP6.

Description	E-value	Query Range	Subject Range
RL31_CHLL7 - 50S ribosomal protein L31 OS=Chlorobium luteolum (strain DSM 273 / 2530) GN=rpmE PE=3 SV=1	124.0	[0..2]	[76..1]
RL31_PELPB - 50S ribosomal protein L31 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpmE PE=3 S...	124.0	[0..2]	[76..1]
gi\|110596933, gi... - gi\|110596933\|ref\|ZP_01385223.1\| ribosomal protein L31 [Chlorobium ferrooxidans DSM 13031], gi\|110341...	123.0	[0..1]	[76..27]
gi\|87284756, gi\|... - gi\|87300885\|ref\|ZP_01083727.1\| 50S ribosomal protein L31 [Synechococcus sp. WH 5701], gi\|87284756\|gb...	122.0	[0..1]	[77..1]
RL31_CHLCH - 50S ribosomal protein L31 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpmE PE=3 SV=1	122.0	[0..2]	[70..1]
RL31_CHLPD - 50S ribosomal protein L31 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpmE PE=3 SV=1	120.0	[0..2]	[76..1]
RL31_PROMM - 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmE PE=3 SV=1	119.0	[0..1]	[76..1]
gi\|148550162, gi... - gi\|82736115\|ref\|ZP_00898975.1\| Ribosomal protein L31 [Pseudomonas putida F1], gi\|82716758\|gb\|EAP5181... gi\|24986872, gi\|... - gi\|26991763\|ref\|NP_747188.1\| ribosomal protein L31 [Pseudomonas putida KT2440], gi\|24986872\|gb\|AAN70...	118.0	[0..2]	[72..30]
gi\|67854593, gi\|... - gi\|67923567\|ref\|ZP_00517040.1\| Ribosomal protein L31 [Crocosphaera watsonii WH 8501], gi\|67854593\|gb...	118.0	[0..1]	[77..1]
gi\|88807913, gi\|... - gi\|88807913\|ref\|ZP_01123424.1\| 50S ribosomal protein L31 [Synechococcus sp. WH 7805], gi\|88787952\|gb...	118.0	[0..1]	[76..1]

Back

Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKADIHPQW YPEAKVYCNG EEVMTVGSTQ PELHVDVWSG NHPFYTGTQK IIDTEGRVER  60
   61 FLRKYGMLEG DQAKSEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1nkwY
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits