YRC Public Data Repository - Protein Structure Prediction

Protein:	RL28_SILPO
Organism:	Ruegeria pomeroyi
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL28_SILPO.

Description	E-value	Query Range	Subject Range
gi\|84514439, gi\|... - gi\|84514439\|ref\|ZP_01001803.1\| ribosomal protein L28 [Loktanella vestfoldensis SKA53], gi\|84511490\|g...	133.0	[0..1]	[95..1]
RL28_RUEST - 50S ribosomal protein L28 OS=Ruegeria sp. (strain TM1040) GN=rpmB PE=3 SV=1	133.0	[0..1]	[94..1]
gi\|114538130, gi... - gi\|114706269\|ref\|ZP_01439171.1\| 50S ribosomal protein L28 [Fulvimarina pelagi HTCC2506], gi\|11453813...	131.0	[0..1]	[94..1]
gi\|109455099, gi... - gi\|110678983\|ref\|YP_681990.1\| ribosomal protein L28 [Roseobacter denitrificans OCh 114], gi\|10945509...	130.0	[0..1]	[95..22]
gi\|84687464, gi\|... - gi\|84687464\|ref\|ZP_01015341.1\| ribosomal protein L28 [Rhodobacterales bacterium HTCC2654], gi\|846644...	130.0	[0..1]	[95..1]
gi\|89069017, gi\|... - gi\|89069017\|ref\|ZP_01156398.1\| ribosomal protein L28 [Oceanicola granulosus HTCC2516], gi\|89045386\|g...	130.0	[0..1]	[93..1]
gi\|86136561, gi\|... - gi\|86136561\|ref\|ZP_01055140.1\| ribosomal protein L28 [Roseobacter sp. MED193], gi\|85827435\|gb\|EAQ476...	129.0	[0..1]	[95..1]
RL28_JANSC - 50S ribosomal protein L28 OS=Jannaschia sp. (strain CCS1) GN=rpmB PE=3 SV=1	129.0	[0..1]	[94..1]
gi\|83852073, gi\|... - gi\|83859714\|ref\|ZP_00953234.1\| ribosomal protein L28 [Oceanicaulis alexandrii HTCC2633], gi\|83852073...	128.0	[0..1]	[95..1]
RL28_AGRFC - 50S ribosomal protein L28 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpmB PE=3 SV=1 gi\|25524569 - gi\|25524569\|pir\|\|AG3001 50S ribosomal protein L28 [imported] - Agrobacterium tumefaciens (strain C58...	128.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRCELTGK GPMTGNNVSH ANNKTRRRFL PNLNDVTLQS ETLGRGVKLR ISAAALRSVD  60
   61 HRGGLDAFLA KAKDEDLSDA ALKVKKEIAK AQAAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2qamZ
Description:	No description for 2qamZ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits