YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27_GLOVI
Organism:	Gloeobacter violaceus
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27_GLOVI.

Description	E-value	Query Range	Subject Range
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	151.0	[0..1]	[90..1]
RK27_TOBAC - 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1	149.0	[0..2]	[91..52]
RL27_PARDP - 50S ribosomal protein L27 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpmA PE=3 SV=1	147.0	[0..1]	[90..1]
RK27_ORYSA - 50S ribosomal protein L27, chloroplast precursor (CL27) - Oryza sativa (Rice) RK27_ORYSJ - 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1	147.0	[0..1]	[91..60]
RK27_ARATH - 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1	146.0	[0..2]	[91..59]
RL27_DESHD - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpmA PE=3 SV... RL27_DESHY - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain Y51) GN=rpmA PE=3 SV=1	146.0	[0..2]	[90..10]
gi\|114771044, gi... - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255], gi\|11454... gi\|114771044 - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255]	146.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKGTGST RNGRDSNAQR LGVKRYGGER VKAGNILIRQ RGTKIHPGAN VGRGSDDTLF  60
   61 ALIEGIVTFE RLGRDRKKVS VYPLAQTAMQ PVAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1v8qA
Description:	Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits