YRC Public Data Repository - Protein Structure Prediction

Protein:	RL25_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL25_CAMJR.

Description	E-value	Query Range	Subject Range
RL25_METFK - 50S ribosomal protein L25 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplY...	222.0	[0..2]	[178..5]
gi\|86282729, gi\|... - gi\|86358627\|ref\|YP_470519.1\| 50S ribosomal protein L25 [Rhizobium etli CFN 42], gi\|86282729\|gb\|ABC91...	221.0	[0..2]	[177..37]
gi\|24982120, gi\|... - gi\|26987457\|ref\|NP_742882.1\| 50S ribosomal protein L25/general stress protein Ctc [Pseudomonas putid...	217.0	[0..2]	[178..26]
gi\|116253213, gi... - gi\|116253213\|ref\|YP_769051.1\| 50S ribosomal protein L25/general stress protein Ctc [Rhizobium legumi...	217.0	[0..2]	[177..8]
RL25_CUPMC - 50S ribosomal protein L25 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	213.0	[0..4]	[177..5]
gi\|83746829, gi\|... - gi\|83746829\|ref\|ZP_00943876.1\| LSU ribosomal protein L25P [Ralstonia solanacearum UW551], gi\|8372641... gi\|206593627, gi... - gi\|207742239\|ref\|YP_002258631.1\| 50s ribosomal protein l25 (general stress protein ctc) [Ralstonia s... gi\|207727835, gi... - gi\|207727835\|ref\|YP_002256229.1\| 50s ribosomal protein l25 [Ralstonia solanacearum MolK2], gi\|206591...	213.0	[0..4]	[177..5]
RL25_CUPPJ - 50S ribosomal protein L25 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rplY PE=3 SV=...	212.0	[0..4]	[177..5]
gi\|114773564, gi... - gi\|114773564\|ref\|ZP_01450662.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [alpha proteoba... gi\|114773564 - gi\|114773564\|ref\|ZP_01450662.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [alpha proteoba... gi\|221135305 - gi\|221135305\|ref\|ZP_03561608.1\| 50S ribosomal protein L25/general stress protein Ctc [Glaciecola sp....	212.0	[0..2]	[178..8]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEGIVRESI GRKAAKALKR DGYLIANIYG KGLENINAAF KVNEFIKEVR KKTTLIFDVK  60
   61 VGSQTLSVVV VDYQKDPVTA ELKHVDLKVA QKGVISKYMV PVKITGTAIG LKNKGVLIQS 120
  121 KRRLKVKCAA ENLPNFFELD VSKLDVGDAL LVRDIVVPAG VTMIDADRVA VVGVEKAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1vsaT
Description:	No description for 1vsaT was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits