YRC Public Data Repository - Protein Structure Prediction

Protein:	PRR73_ORYSA
Organism:	Oryza sativa
Length:	767 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRR73_ORYSA.

Description	E-value	Query Range	Subject Range
gi\|51571885 - gi\|51571885\|dbj\|BAD38859.1\| pseudo-response regulator 73 [Oryza sativa Indica Group]	508.0	[0..1]	[767..1]
gi\|125585839, gi... - gi\|50948993\|ref\|XP_493854.1\| putative pseudo-response regulator [Oryza sativa (japonica cultivar-gro...	501.0	[0..1]	[767..1]
gi\|158320115, gi... - gi\|158320115\|ref\|YP_001512622.1\| two component, sigma54 specific, Fis family transcriptional regulat...	388.0	[0..79]	[545..1]
gi\|77639083, gi\|... - gi\|77685113\|ref\|ZP_00800523.1\| Helix-turn-helix, Fis-type [Alkaliphilus metalliredigenes QYMF], gi\|7...	382.0	[0..82]	[545..3]
gi\|75243036, gi\|... - gi\|75243036\|ref\|ZP_00726742.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... gi\|91211514, gi\|... - gi\|91211514\|ref\|YP_541500.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli UTI89... gi\|218559138, gi... - gi\|218559138\|ref\|YP_002392051.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli S... gi\|110344022, gi... - gi\|110642430\|ref\|YP_670160.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 536]... gi\|218427947, gi... - gi\|218690383\|ref\|YP_002398595.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli E... gi\|115513538, gi... - gi\|117624414\|ref\|YP_853327.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli APEC... gi\|237704695, gi... - gi\|237704695\|ref\|ZP_04535176.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia sp. 3_2... gi\|227835628, gi... - gi\|227887278\|ref\|ZP_04005083.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli 83... gi\|26109014, gi\|... - gi\|26248609\|ref\|NP_754649.1\| acetoacetate metabolism regulatory protein AtoC [Escherichia coli CFT07...	381.0	[0..77]	[547..1]
gi\|242377856, gi... - gi\|251785583\|ref\|YP_002999887.1\| hypothetical protein B21_02106 [Escherichia coli BL21], gi\|24237785... gi\|253772856, gi... - gi\|254288993\|ref\|YP_003054741.1\| fused response regulator of ato operon, in two-component system wit... gi\|253974133, gi... - gi\|254162232\|ref\|YP_003045340.1\| fused response regulator of ato operon, in two-component system wit... EG11668 - fused response regulator of ato operon, in two-component system with AtoS: response regulator /sigma5... gi\|188494177, gi... - gi\|75514413\|ref\|ZP_00736691.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... gi\|75196263, gi\|... - gi\|75196263\|ref\|ZP_00706333.1\| COG2204: Response regulator containing CheY-like receiver, AAA-type A... EG11668 - fused response regulator of ato operon, in two-component system with AtoS: response regulator /sigma5... gi\|169889675, gi... - gi\|170081840\|ref\|YP_001731160.1\| fused response regulator of ato operon, in two-component system wit... gi\|1736875, gi\|8... - gi\|89109039\|ref\|AP_002819.1\| fused response regulator of ato opeon, in two-component system with Ato... ATOC_ECOLI - Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornith... gi\|238901395, gi... - gi\|238901395\|ref\|YP_002927191.1\| fused response regulator of ato operon, in two-component system wit...	381.0	[0..77]	[547..1]
gi\|134299848, gi... - gi\|88947199\|ref\|ZP_01150208.1\| Helix-turn-helix, Fis-type [Desulfotomaculum reducens MI-1], gi\|88923...	381.0	[0..82]	[546..6]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSACEAGTD EPSRDDVKGT GNGILENGHS HKPEEEEWRN GMGEDLPNGH STPPEPQQTD  60
   61 EQKEHQVQIV R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WERFLPVKTL RVLLVENDDS TRQVVSALLR KCCYEVIPAE NGLHAWQCLE DLQNHIDLVL  60
   61 TEVVMPRLSG IGLLSKITSH KICKDIPVIM MSSNDSMGTV FKCLSKGAVD FLVKPIRKNE 120
  121 LKNLWQHVWR RCHSSSGSGS ESGIRTQKCT KPKVDDEYEN NSGSNNDNED DDDNDEDDDD 180
  181 LSVGHNARDG SDNGSGTQSS WTKRAVEIDS PQQMSPDQPS DLPDSTCAQV IHPTSEICSN 240
  241 RWLPTANKRS GKKHKENNDD SMGKYLEIGA PRNSSMEYQS SPREMSVNPT EKQHETLMPQ 300
  301 SKTTRETDSR NTQNEPTTQT VDLISSIARS TDDKQVVRIN NAPDCSSKVP DGNDKNRDSL 360
  361 IDMTSEELGL KRLKTTGSAT EIHDERNILK RSDLSAFTRY HTTVASNQGG AG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.0
Match:	1ny5A
Description:	Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [484-548]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGGSCSPQDN SSEALKTDSN CKVKSNSDAA EIKQGSNGSS NNNDMGSSTK NAITKPSSNR  60
   61 GKVIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1ojlA
Description:	Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [549-767]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSAVKATQHT SAFHPVQRQT SPANVVGKDK VDEGIANGVN VGHPVDVQNS FMQHHHHVHY  60
   61 YVHVMTQQQQ QPSIERGSSD AQCGSSNVFD PPIEGHAANY SVNGSFSGGH NGNNGQRGPS 120
  121 TAPNVGRPNM ETVNGIVDEN GAGGGNGSGS GSGNDLYQNG VCYREAALNK FRQKRKVRNF 180
  181 GKKVRYQSRK RLAEQRPRIR GQFVRQSGQE DQAGQDEDR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits