YRC Public Data Repository - Protein Structure Prediction

Protein:	PAND_NOCFA
Organism:	Nocardia farcinica
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAND_NOCFA.

Description	E-value	Query Range	Subject Range
PAND_RHOJR - Aspartate 1-decarboxylase OS=Rhodococcus jostii (strain RHA1) GN=panD PE=1 SV=1	235.0	[0..1]	[137..1]
PAND_PELTS - Aspartate 1-decarboxylase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=...	229.0	[0..1]	[129..1]
PAND_CORJK - Aspartate 1-decarboxylase OS=Corynebacterium jeikeium (strain K411) GN=panD PE=3 SV=1	227.0	[0..1]	[134..1]
PAND_MYCA1 - Aspartate 1-decarboxylase OS=Mycobacterium avium (strain 104) GN=panD PE=1 SV=1 PAND_MYCPA - Aspartate 1-decarboxylase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=panD PE=... gi\|254773508 - gi\|254773508\|ref\|ZP_05215024.1\| aspartate alpha-decarboxylase [Mycobacterium avium subsp. avium ATCC... PAND_MYCPA - Aspartate 1-decarboxylase OS=Mycobacterium paratuberculosis GN=panD PE=3 SV=1	225.0	[0..1]	[137..1]
PAND_MYCGI - Aspartate 1-decarboxylase OS=Mycobacterium gilvum (strain PYR-GCK) GN=panD PE=3 SV=1	224.0	[0..1]	[134..1]
PAND_CARHZ - Aspartate 1-decarboxylase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2...	224.0	[0..1]	[125..1]
PAND_CLOTH - Aspartate 1-decarboxylase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253302, gi... - gi\|196253302\|ref\|ZP_03151935.1\| aspartate 1-decarboxylase [Clostridium thermocellum DSM 4150], gi\|19...	222.0	[0..1]	[125..1]
PAND_MYCVP - Aspartate 1-decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=panD PE=1 SV=1	222.0	[0..1]	[134..1]
PAND_MYCBP - Aspartate 1-decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=panD PE=1 SV=1 gi\|254366858, gi... - gi\|254366858\|ref\|ZP_04982897.1\| aspartate 1-decarboxylase Rv3601 [Mycobacterium tuberculosis str. Ha... gi\|218755383 - gi\|218755383\|ref\|ZP_03534179.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis GM 1503] PAND_MYCTA - Aspartate 1-decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=panD PE=1 SV=... gi\|215447939 - gi\|215447939\|ref\|ZP_03434691.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis T85] PAND_MYCBT - Aspartate 1-decarboxylase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN... gi\|219559676 - gi\|219559676\|ref\|ZP_03538752.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis T17] gi\|148723333, gi... - gi\|76782545\|ref\|ZP_00769749.1\| COG0853: Aspartate 1-decarboxylase [Mycobacterium tuberculosis F11], ... PAND_MYCTO - Aspartate 1-decarboxylase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=panD PE=3 SV=... gi\|194542153, gi... - gi\|81252928\|ref\|ZP_00877501.1\| COG0853: Aspartate 1-decarboxylase [Mycobacterium tuberculosis C], gi... gi\|215413524 - gi\|215413524\|ref\|ZP_03422196.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis 94_M4241A] gi\|215405650 - gi\|215405650\|ref\|ZP_03417831.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis 02_1987] gi\|215432575 - gi\|215432575\|ref\|ZP_03430494.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis EAS054] gi\|215424845 - gi\|215424845\|ref\|ZP_03422764.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis T92] gi\|253322144, gi... - gi\|253800641\|ref\|YP_003033642.1\| aspartate 1-decarboxylase precursor panD [Mycobacterium tuberculosi... gi\|254552714 - gi\|254552714\|ref\|ZP_05143161.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis '98-R604 I... gi\|254818177 - gi\|254818177\|ref\|ZP_05223178.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis KZN 4207] gi\|255095094 - gi\|255095094\|ref\|ZP_05324572.1\| aspartate alpha-decarboxylase [Mycobacterium tuberculosis KZN 605] PAND_MYCTU - Aspartate 1-decarboxylase OS=Mycobacterium tuberculosis GN=panD PE=1 SV=1 PAND_MYCTU - Aspartate 1-decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=panD PE=1 SV=... PAND_MYCBO - Aspartate 1-decarboxylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=panD PE=3 SV=1 PAND_MYCBO - Aspartate 1-decarboxylase OS=Mycobacterium bovis GN=panD PE=3 SV=1	222.0	[0..1]	[134..1]
PAND_CALS8 - Aspartate 1-decarboxylase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp...	222.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTMMKSKI HRATVTHADL HYVGSVTVDQ DLLDAADLLE GEQVCIVDID NGARLETYVI  60
   61 AGERGSGVIG INGAAAHLVH PGDLVILIAY GMMNEQEIAE YDPKVVFVDE RNRPVELGSD 120
  121 PAHAPEGSGL TSPRSLTFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2c45A
Description:	No description for 2c45A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits