YRC Public Data Repository - Protein Structure Prediction

Protein:	PAND_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAND_CAMJR.

Description	E-value	Query Range	Subject Range
PAND_PELTS - Aspartate 1-decarboxylase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=...	215.0	[0..1]	[123..1]
PAND_CARHZ - Aspartate 1-decarboxylase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2...	214.0	[0..1]	[124..1]
PAND_CALS8 - Aspartate 1-decarboxylase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp...	214.0	[0..1]	[126..1]
gi\|83726522, gi\|... - gi\|83746753\|ref\|ZP_00943801.1\| Aspartate 1-decarboxylase [Ralstonia solanacearum UW551], gi\|83726522...	214.0	[0..1]	[117..60]
PAND_CLOTH - Aspartate 1-decarboxylase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253302, gi... - gi\|196253302\|ref\|ZP_03151935.1\| aspartate 1-decarboxylase [Clostridium thermocellum DSM 4150], gi\|19...	214.0	[0..1]	[125..1]
PAND_NEIMB - Aspartate 1-decarboxylase OS=Neisseria meningitidis serogroup B (strain MC58) GN=panD PE=3 SV=1 gi\|225365767, gi... - gi\|225365767\|ref\|ZP_03745625.1\| hypothetical protein NEICINOT_01767 [Neisseria cinerea ATCC 14685], ... gi\|254668628, gi... - gi\|254805086\|ref\|YP_003083307.1\| Aspartate 1-decarboxylase [Neisseria meningitidis], gi\|254668628\|em... PAND_NEIMB - Aspartate 1-decarboxylase OS=Neisseria meningitidis serogroup B GN=panD PE=3 SV=1 gi\|11280004 - pir\|\|A81100 aspartate 1-decarboxylase (EC 4.1.1.11) NMB1282 [similarity] - Neisseria meningitidis (s...	213.0	[0..1]	[126..1]
PAND_NOCFA - Aspartate 1-decarboxylase OS=Nocardia farcinica (strain IFM 10152) GN=panD PE=3 SV=1 PAND_NOCFA - Aspartate 1-decarboxylase OS=Nocardia farcinica GN=panD PE=3 SV=1	212.0	[0..1]	[123..1]
gi\|134298040, gi... - gi\|88946453\|ref\|ZP_01149531.1\| Aspartate decarboxylase [Desulfotomaculum reducens MI-1], gi\|88924031...	212.0	[0..1]	[123..1]
PAND_CLOB8 - Aspartate 1-decarboxylase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=panD PE=3 ...	211.0	[0..1]	[122..1]
gi\|57020237, gi\|... - gi\|57168429\|ref\|ZP_00367563.1\| aspartate 1-decarboxylase [Campylobacter coli RM2228], gi\|57020237\|gb...	210.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNITLLKSKI HRANVTEARL DYVGSISIDE KLLQASGILE YEKVQVVNVN NGARFETYTI  60
   61 ATQEEGVVCL NGAAARLAEV GDKVIIMSYA DFNEEEAKTF KPKVVFVDEN NTATKITNYE 120
  121 KHGAIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	2c45A
Description:	No description for 2c45A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits