YRC Public Data Repository - Protein Structure Prediction

Protein:	NDK_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDK_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|185135416, gi... - gi\|28436149\|gb\|AAO42980.1\| nucleoside diphosphate kinase [Oncorhynchus mykiss], gi\|185135416\|ref\|NP_...	227.0	[0..2]	[137..5]
gi\|79160090, gi\|... - gi\|79160090\|gb\|AAI07895.1\| NME1-NME2 protein [Homo sapiens], gi\|119614969\|gb\|EAW94563.1\| hCG2001850,...	226.0	[0..1]	[136..144]
NDK_CARHZ - Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /...	226.0	[0..1]	[136..1]
gi\|206580, gi\|13... - gi\|206580\|gb\|AAA42017.1\| RBL-NDP kinase 18kDa subunit (p18), ref\|NP_114021.1\| nucleoside diphosphate...	225.0	[0..1]	[136..4]
gi\|94966478 - gi\|94966478\|dbj\|BAE94182.1\| nucleoside diphosphate kinase [Geobacillus stearothermophilus]	225.0	[0..2]	[136..3]
gi\|58376473, gi\|... - gi\|58376473\|ref\|XP_308641.2\| ENSANGP00000011253 [Anopheles gambiae str. PEST], gi\|55245735\|gb\|EAA045...	225.0	[0..2]	[136..6]
NDKB_PONAB - Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1 NDKB_PONPY - Nucleoside diphosphate kinase B - Pongo pygmaeus (Orangutan)	224.0	[0..1]	[136..4]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTLSIIKP DAVKKGVIGK ILDRFESNGL RIAAMKKVQL SKEQAENFYA VHKERPFFKD  60
   61 LVEFMISGPV VVSVLEGEGA VLKNRDLMGA TNPKEAKAGT IRADFAESID ANAVHGSDSL 120
  121 ENAKIEIDFF FKPNEIC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1nhkR
Description:	Nucleoside diphosphate kinases
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits