YRC Public Data Repository - Protein Structure Prediction

Protein:	LYNX1_PANTR
Organism:	Pan troglodytes
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYNX1_PANTR.

Description	E-value	Query Range	Subject Range
gi\|109482296, gi... - gi\|27662050\|ref\|XP_216965.1\| PREDICTED: similar to Ly-6/neurotoxin-like protein 1 precursor (GC26) [... LYNX_MOUSE, LYNX... - (Q9WVC2) Ly-6/neurotoxin-like protein 1 precursor (GC26), Ly-6/neurotoxin-like protein 1 OS=Mus musc...	115.0	[0..1]	[116..1]
gi\|50731914 - gi\|50731914\|ref\|XP_418414.1\| PREDICTED: similar to prostate stem cell antigen [Gallus gallus]	106.0	[0..1]	[116..273]
LYNX1 - Ly6/neurotoxin 1	105.0	[0..1]	[116..1]
LYNX1_MACMU, LYN... - (P61050) Ly-6/neurotoxin-like protein 1 precursor, Ly-6/neurotoxin-like protein 1 OS=Macaca mulatta ...	100.0	[0..1]	[116..1]
gi\|189339280, gi... - ref\|XP_343264.1\| similar to Ly6-B antigen gene [Rattus norvegicus], gi\|189339280\|ref\|NP_001121571.1\|...	98.0	[0..1]	[116..7]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLLTLILV VLMGLPLAQA LDCHVCAYNG DNCFNPMRCP AMVAYCMTTR TYYTPTRMKV  60
   61 SKSCVPRCFE TVYDGYSKHA STTSCCQYDL CNGAGLATPA TLALAPILLA TLWGLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	2j8bA
Description:	No description for 2j8bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits