YRC Public Data Repository - Protein Structure Prediction

Protein:	LEUD_SALPA
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEUD_SALPA.

Description	E-value	Query Range	Subject Range
gi\|168243477, gi... - gi\|205337440\|gb\|EDZ24204.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALTY - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium GN=leuD1 PE=1 SV=1 gi\|205331577, gi... - gi\|205331577\|gb\|EDZ18341.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALTY - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATC... gi\|197240220, gi... - gi\|197261965\|ref\|ZP_03162039.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... gi\|197212139, gi... - gi\|197248436\|ref\|YP_002145096.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica s... gi\|194408815, gi... - gi\|194450511\|ref\|YP_002044080.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp.... gi\|205342455, gi... - gi\|205342455\|gb\|EDZ29219.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LED1_SALTY, LEUD... - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella typhimurium GN=leuD1 PE=3 SV=1, (P04787)... gi\|204927076, gi... - gi\|204927076\|ref\|ZP_03218278.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=leuD] [protein=isopropylmalate isomerase small subunit] [protein_id=YP_005235764.1] [location=...	2.0E-69	[1..201]	[1..201]
gi\|199606179, gi... - gi\|200389081\|ref\|ZP_03215693.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica su... gi\|168464342, gi... - gi\|195632625\|gb\|EDX51079.1\| 3-isopropylmalate dehydratase, small subunit [Salmonella enterica subsp.... LEUD1_SALCH - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella choleraesuis GN=leuD1 PE=3 SV=1 LEUD1_SALCH - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella choleraesuis GN=leuD1 PE=3 SV=1 LEUD1_SALCH - 3-isopropylmalate dehydratase small subunit 1 OS=Salmonella choleraesuis (strain SC-B67) GN=leuD1 PE... gi\|224581953, gi... - gi\|224581953\|ref\|YP_002635751.1\| isopropylmalate isomerase small subunit [Salmonella enterica subsp....	3.0E-68	[1..201]	[1..201]
LEUD_PASMU - 3-isopropylmalate dehydratase small subunit OS=Pasteurella multocida GN=leuD PE=3 SV=1 LEUD_PASMU - 3-isopropylmalate dehydratase small subunit OS=Pasteurella multocida (strain Pm70) GN=leuD PE=3 SV=1	5.0E-68	[1..201]	[1..201]
LEUD_HAEIN - 3-isopropylmalate dehydratase small subunit OS=Haemophilus influenzae GN=leuD PE=3 SV=1 LEUD_HAEIN - 3-isopropylmalate dehydratase small subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121...	3.0E-67	[2..201]	[1..200]
LEUD_PHOPR - 3-isopropylmalate dehydratase small subunit OS=Photobacterium profundum GN=leuD PE=3 SV=1 LEUD_PHOPR - 3-isopropylmalate dehydratase small subunit OS=Photobacterium profundum (strain SS9) GN=leuD PE=3 SV...	4.0E-67	[2..200]	[1..199]
LEUD_PECAS - 3-isopropylmalate dehydratase small subunit OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC ... LEUD_ERWCT - 3-isopropylmalate dehydratase small subunit OS=Erwinia carotovora subsp. atroseptica GN=leuD PE=3 SV...	8.0E-67	[2..200]	[1..199]
LEUD_SHIDS - 3-isopropylmalate dehydratase small subunit OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=leu...	8.0E-67	[1..201]	[1..201]
gi\|42630175 - gi\|42630175\|ref\|ZP_00155719.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Haemophilus inf... gi\|145274587, gi... - gi\|145640661\|ref\|ZP_01796244.1\| isopropylmalate isomerase small subunit [Haemophilus influenzae R302... gi\|145640661 - gi\|145640661\|ref\|ZP_01796244.1\| isopropylmalate isomerase small subunit [Haemophilus influenzae R302...	9.0E-67	[2..201]	[1..200]
LEUD_ECOHS - 3-isopropylmalate dehydratase small subunit OS=Escherichia coli O9:H4 (strain HS) GN=leuD PE=3 SV=1	1.0E-66	[1..200]	[1..200]
LEUD_ECO5E - 3-isopropylmalate dehydratase small subunit OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=le... gi\|208819718, gi... - gi\|208819718\|ref\|ZP_03260038.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:... gi\|217325909, gi... - gi\|217325909\|ref\|ZP_03441993.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:... gi\|195939288 - gi\|195939288\|ref\|ZP_03084670.1\| isopropylmalate isomerase small subunit [Escherichia coli O157:H7 st... gi\|189376377, gi... - gi\|189376377\|gb\|EDU94793.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|208814023, gi... - gi\|208814023\|ref\|ZP_03255352.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:... gi\|208806667, gi... - gi\|208806667\|ref\|ZP_03249004.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:... gi\|168776914, gi... - gi\|187767761\|gb\|EDU31605.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|168771294, gi... - gi\|189359903\|gb\|EDU78322.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|189370785, gi... - gi\|189370785\|gb\|EDU89201.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|168781955, gi... - gi\|189000429\|gb\|EDU69415.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|168751420, gi... - gi\|188014534\|gb\|EDU52656.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|189365894, gi... - gi\|189365894\|gb\|EDU84310.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|189357064, gi... - gi\|189357064\|gb\|EDU75483.1\| 3-isopropylmalate dehydratase, small subunit [Escherichia coli O157:H7 s... gi\|209746736, gi... - pir\|\|C85489 isopropylmalate isomerase subunit [imported] - Escherichia coli (strain O157:H7, substra... gi\|13359531, gi\|... - gi\|15829329\|ref\|NP_308102.1\| isopropylmalate isomerase small subunit [Escherichia coli O157:H7 str. ... gi\|12512771, gi\|... - gi\|15799755\|ref\|NP_285767.1\| isopropylmalate isomerase small subunit [Escherichia coli O157:H7 EDL93... LEUD_ECO57 - 3-isopropylmalate dehydratase small subunit OS=Escherichia coli O157:H7 GN=leuD PE=3 SV=3 gi\|254791209, gi... - gi\|254791209\|ref\|YP_003076046.1\| 3-isopropylmalate isomerase subunit [Escherichia coli O157:H7 str. ...	1.0E-66	[1..201]	[1..201]

Back

Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKFTQHTG LVVPLDAANV DTDAIIPKQF LQKVTRTGFG AHLFNDWRFL DEKGQQPNPE  60
   61 FVLNFPEYQG ASILLARENF GCGSSREHAP WALTDYGFKV VIAPSFADIF YGNSFNNQLL 120
  121 PVKLSDEQVD ELFTLVKANP GIKFEVDLEA QVVKAGDKTY SFKIDDFRRH CMLNGLDSIG 180
  181 LTLQHEDAIA EYENKQPAFM R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	2hcuA
Description:	No description for 2hcuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits