YRC Public Data Repository - Protein Structure Prediction

Protein:	KTHY_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KTHY_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|86608314 - gi\|86608314\|ref\|YP_477076.1\| thymidylate kinase [Cyanobacteria bacterium Yellowstone B-Prime] KTHY_SYNJB - Thymidylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=tmk PE=3 SV=1	174.0	[0..1]	[192..1]
gi\|88912775, gi\|... - gi\|88931496\|ref\|ZP_01137190.1\| Thymidylate kinase [Acidothermus cellulolyticus 11B], gi\|88912775\|gb\|...	172.0	[0..2]	[191..467]
gi\|71916914, gi\|... - gi\|72163182\|ref\|YP_290839.1\| thymidylate kinase [Thermobifida fusca YX], gi\|71916914\|gb\|AAZ56816.1\| ...	172.0	[0..1]	[192..466]
gi\|113904572, gi... - gi\|145596534\|ref\|YP_001160831.1\| thymidylate kinase [Salinispora tropica CNB-440], gi\|145305871\|gb\|A...	171.0	[0..1]	[191..449]
gi\|62424658 - gi\|62424658\|ref\|ZP_00379801.1\| COG0477: Permeases of the major facilitator superfamily [Brevibacteri...	169.0	[0..2]	[192..428]
gi\|88778555, gi\|... - gi\|88798792\|ref\|ZP_01114375.1\| Thymidylate kinase [Reinekea sp. MED297], gi\|88778555\|gb\|EAR09747.1\| ...	168.0	[0..2]	[192..5]
gi\|86607432 - gi\|86607432\|ref\|YP_476195.1\| thymidylate kinase [Cyanobacteria bacterium Yellowstone A-Prime] KTHY_SYNJA - Thymidylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tmk PE=3 SV=1	168.0	[0..1]	[192..1]
gi\|66782947, gi\|... - gi\|94986082\|ref\|YP_605446.1\| thymidylate kinase [Deinococcus geothermalis DSM 11300], gi\|94556363\|gb...	167.0	[0..1]	[192..5]
gi\|81298904, gi\|... - gi\|81298904\|ref\|YP_399112.1\| thymidylate kinase [Synechococcus elongatus PCC 7942], gi\|81167785\|gb\|A...	167.0	[0..2]	[192..6]
KTHY_PELCD - Thymidylate kinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tmk PE=3 SV=1	167.0	[0..2]	[188..4]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVVFEGIDC VGKSTQISLL KEIYKDAIFT LEPGGTELGK HLREILLNKT HPINKRAELL  60
   61 LFLADRAQHF EEILKTNQNK LIISDRSFIS GMAYAKDFEN DLLFALNSFA LENFFPQKII 120
  121 FLKGDANLIQ ERLSQKELDS IEKRGIEYFL SVQDKLEKVL HFLKEKISVE ILTLDAKESK 180
  181 EKLHQQIKEF LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	2ccgA
Description:	No description for 2ccgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits