YRC Public Data Repository - Protein Structure Prediction

Protein:	KDSA_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDSA_CAMJR.

Description	E-value	Query Range	Subject Range
KDSA_METCA - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Methylococcus capsulatus GN=kdsA PE=3 SV=2 KDSA_METCA - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 111...	295.0	[0..3]	[268..23]
KDSA_LEGPA - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Legionella pneumophila (strain Paris) GN=kdsA PE=3 SV=1 KDSA_LEGPH - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Legionella pneumophila subsp. pneumophila (strain Phila... KDSA_LEGPC - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Legionella pneumophila (strain Corby) GN=kdsA PE=3 SV=1	290.0	[0..2]	[269..12]
KDSA_LEGPL - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Legionella pneumophila (strain Lens) GN=kdsA PE=3 SV=1	290.0	[0..2]	[269..12]
KDSA_PELCD - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN...	288.0	[0..3]	[270..17]
KDSA_AROAE - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Aromatoleum aromaticum (strain EbN1) GN=kdsA PE=3 SV=1	288.0	[0..2]	[270..12]
KDSA_HAHCH - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Hahella chejuensis (strain KCTC 2396) GN=kdsA PE=3 SV=1	287.0	[0..2]	[268..17]
KDSA_GEOMG - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	287.0	[0..2]	[268..16]
KDSA_THIDA - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=kdsA ...	286.0	[0..2]	[270..12]
gi\|11268172 - gi\|11268172\|pir\|\|D82700 2-dehydro-3-deoxyphosphooctonate aldolase XF1289 [imported] - Xylella fastid... gi\|9106278, gi\|1... - gi\|9106278\|gb\|AAF84098.1\|AE003962_8 2-dehydro-3-deoxyphosphooctonate aldolase [Xylella fastidiosa 9a...	285.0	[0..2]	[270..31]
KDSA_XYLFA - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Xylella fastidiosa (strain 9a5c) GN=kdsA PE=3 SV=2 KDSA_XYLFA - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Xylella fastidiosa GN=kdsA PE=3 SV=2	285.0	[0..2]	[270..12]

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Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKMILIAGP CVIESKDLIF KVAEQLKNFN ENPNIEFYFK SSFDKANRTS INSFRGPGLE  60
   61 EGLKILQSVK DEFGMKILTD IHESNQANPV SEVADVLQIP AFLCRQTDLL VAAAKTKAKI 120
  121 NIKKGQFLNP SDIKYSVKKV LQTRGIEDEG YEAAQRNGVF VAERGASFGY GNLVVDMRSL 180
  181 VIMREFAPVI FDATHSVQMP GAAGGSSGGK SEFVEPLARA AAAVGIDGFF FETHINPCEA 240
  241 LCDGPNMLNL TRLKNCVNTL LEIQNIIKEN K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.522879
Match:	1fwnA
Description:	3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits