YRC Public Data Repository - Protein Structure Prediction

Protein:	HNSB2_SALTY, CNU...
Organism:	Salmonella typhimurium
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HNSB2_SALTY, CNU....

Description	E-value	Query Range	Subject Range
gi\|224584030, gi... - gi\|224584030\|ref\|YP_002637828.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|161363484, gi... - gi\|161614120\|ref\|YP_001588085.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp... gi\|62127682, gi\|... - gi\|62180049\|ref\|YP_216466.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp. en...	4.0E-27	[1..71]	[24..94]
YDGT_ECOLI, HNSB... - (P64467) Hypothetical protein ydgT, H-NS/stpA-binding protein 2 - Escherichia coli CNU_ECOL5 - OriC-binding nucleoid-associated protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cnu P... CNU_ECOL6, YDGT_... - (P64468) Hypothetical protein ydgT, H-NS/stpA-binding protein 2 - Escherichia coli O6, OriC-binding ... CNU_SHIF8 - OriC-binding nucleoid-associated protein OS=Shigella flexneri serotype 5b (strain 8401) GN=cnu PE=3 ... CNU_SHIFL - OriC-binding nucleoid-associated protein OS=Shigella flexneri GN=cnu PE=3 SV=1 CNU_ECO57 - OriC-binding nucleoid-associated protein OS=Escherichia coli O157:H7 GN=cnu PE=3 SV=1 CNU_ECOUT - OriC-binding nucleoid-associated protein OS=Escherichia coli (strain UTI89 / UPEC) GN=cnu PE=3 SV=1 gi\|13361801, gi\|... - gi\|15831588\|ref\|NP_310361.1\| oriC-binding nucleoid-associated protein [Escherichia coli O157:H7 str.... gi\|218705126, gi... - gi\|218705126\|ref\|YP_002412645.1\| oriC-binding nucleoid-associated protein [Escherichia coli UMN026],... CNU_ECOL6 - OriC-binding nucleoid-associated protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UP... gi\|124529218, gi... - gi\|124529218\|ref\|ZP_01700293.1\| Haemolysin expression modulating family protein [Escherichia coli B]... gi\|24113015, gi\|... - gi\|24113015\|ref\|NP_707525.1\| oriC-binding nucleoid-associated protein [Shigella flexneri 2a str. 301... gi\|168757459, gi... - gi\|189355553\|gb\|EDU73972.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|188015246, gi... - gi\|188015246\|gb\|EDU53368.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|189359990, gi... - gi\|189359990\|gb\|EDU78409.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|189366175, gi... - gi\|189366175\|gb\|EDU84591.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|188999238, gi... - gi\|188999238\|gb\|EDU68224.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|187768690, gi... - gi\|187768690\|gb\|EDU32534.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|189376880, gi... - gi\|189376880\|gb\|EDU95296.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|189370965, gi... - gi\|189370965\|gb\|EDU89381.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... EG14303 - nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor / Nucleoid-associated ori... gi\|215486802, gi... - gi\|215486802\|ref\|YP_002329233.1\| oriC-binding nucleoid-associated protein [Escherichia coli O127:H6 ... gi\|30041389, gi\|... - gi\|30063140\|ref\|NP_837311.1\| oriC-binding nucleoid-associated protein [Shigella flexneri 2a str. 245... gi\|209912197, gi... - gi\|209918938\|ref\|YP_002293022.1\| oriC-binding nucleoid-associated protein [Escherichia coli SE11], g... gi\|218360961, gi... - gi\|218554193\|ref\|YP_002387106.1\| oriC-binding nucleoid-associated protein [Escherichia coli IAI1], g... gi\|15802039, gi\|... - gi\|15802039\|ref\|NP_288061.1\| oriC-binding nucleoid-associated protein [Escherichia coli O157:H7 EDL9... gi\|217328687, gi... - gi\|217328687\|ref\|ZP_03444768.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|218689572, gi... - gi\|218689572\|ref\|YP_002397784.1\| oriC-binding nucleoid-associated protein [Escherichia coli ED1a], g... gi\|218365265, gi... - gi\|218558496\|ref\|YP_002391409.1\| oriC-binding nucleoid-associated protein [Escherichia coli S88], gi... gi\|218369793, gi... - gi\|218699807\|ref\|YP_002407436.1\| oriC-binding nucleoid-associated protein [Escherichia coli IAI39], ... gi\|227885959, gi... - gi\|227885959\|ref\|ZP_04003764.1\| oriC-binding nucleoid-associated protein [Escherichia coli 83972], g... gi\|218351920, gi... - gi\|218695188\|ref\|YP_002402855.1\| oriC-binding nucleoid-associated protein [Escherichia coli 55989], ... gi\|237705568, gi... - gi\|237705568\|ref\|ZP_04536049.1\| oriC-binding nucleoid-associated protein [Escherichia sp. 3_2_53FAA]... gi\|169889124, gi... - gi\|170081289\|ref\|YP_001730609.1\| regulator [Escherichia coli str. K-12 substr. DH10B], gi\|169889124\|... gi\|238863070, gi... - gi\|238900841\|ref\|YP_002926637.1\| putative regulator [Escherichia coli BW2952], gi\|238863070\|gb\|ACR65... gi\|169754951, gi... - gi\|170020023\|ref\|YP_001724977.1\| oriC-binding nucleoid-associated protein [Escherichia coli ATCC 873... gi\|251785083, gi... - gi\|251785083\|ref\|YP_002999387.1\| hypothetical protein B21_01585 [Escherichia coli BL21], gi\|24237735... gi\|195939014 - gi\|195939014\|ref\|ZP_03084396.1\| oriC-binding nucleoid-associated protein [Escherichia coli O157:H7 s... gi\|253773417, gi... - gi\|254288476\|ref\|YP_003054224.1\| predicted regulator [Escherichia coli BL21(DE3)], gi\|253977783\|gb\|A... gi\|170679680, gi... - gi\|170679680\|ref\|YP_001743629.1\| haemolysin expression modulating protein [Escherichia coli SMS-3-5]... gi\|253973588, gi... - gi\|254161687\|ref\|YP_003044795.1\| predicted regulator [Escherichia coli B str. REL606], gi\|253973588\|... gi\|208817063, gi... - gi\|208817063\|ref\|ZP_03258183.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|254592642, gi... - gi\|254793242\|ref\|YP_003078079.1\| predicted regulator [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|208724849, gi... - gi\|208810333\|ref\|ZP_03252209.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|209158667, gi... - gi\|209397267\|ref\|YP_002270695.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 ... gi\|208739240, gi... - gi\|208819117\|ref\|ZP_03259437.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... EG14303 - nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor / Nucleoid-associated ori... gi\|192927416, gi... - gi\|75257044\|ref\|ZP_00728604.1\| hypothetical protein EcolE2_01003094 [Escherichia coli E22], gi\|19306... gi\|188488725, gi... - gi\|75512942\|ref\|ZP_00735423.1\| hypothetical protein Ecol5_01002925 [Escherichia coli 53638], gi\|1884... gi\|193070225, gi... - gi\|75234938\|ref\|ZP_00719217.1\| hypothetical protein EcolE1_01003222 [Escherichia coli E110019], gi\|1... gi\|191173452, gi... - gi\|75238814\|ref\|ZP_00722798.1\| hypothetical protein EcolF_01003334 [Escherichia coli F11], gi\|191173... CNU_SHIBS - OriC-binding nucleoid-associated protein OS=Shigella boydii serotype 4 (strain Sb227) GN=cnu PE=3 SV... gi\|89108467, gi\|... - gi\|89108467\|ref\|AP_002247.1\| predicted regulator [Escherichia coli str. K-12 substr. W3110], gi\|8567... CNU_SHISS - OriC-binding nucleoid-associated protein OS=Shigella sonnei (strain Ss046) GN=cnu PE=3 SV=1 CNU_SHIDS - OriC-binding nucleoid-associated protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cnu PE... gi\|194436541, gi... - gi\|83587960\|ref\|ZP_00926586.1\| hypothetical protein Ecol1_01000993 [Escherichia coli 101-1], gi\|1944... gi\|187730877, gi... - gi\|75178479\|ref\|ZP_00698525.1\| hypothetical protein SboyB_01001399 [Shigella boydii BS512], gi\|18773... gi\|83571011, gi\|... - gi\|83571011\|ref\|ZP_00922453.1\| hypothetical protein Sdys1_01000842 [Shigella dysenteriae 1012], gi\|1... gi\|194415875, gi... - gi\|75212962\|ref\|ZP_00712960.1\| hypothetical protein EcolB_01000344 [Escherichia coli B171], gi\|19442... gi\|75230926, gi\|... - gi\|75230926\|ref\|ZP_00717375.1\| hypothetical protein EcolB7_01000907 [Escherichia coli B7A], gi\|19116... gi\|157080821, gi... - gi\|75190665\|ref\|ZP_00703932.1\| hypothetical protein EcolE_01003975 [Escherichia coli E24377A], gi\|15... gi\|157066767, gi... - gi\|75195705\|ref\|ZP_00705775.1\| hypothetical protein EcolH_01001503 [Escherichia coli HS], gi\|1571610...	5.0E-26	[1..71]	[1..71]
lcl\|NC_016856.1_... - [gene=ydgT] [protein=oriC-binding nucleoid-associated protein] [protein_id=YP_005237332.1] [location... gi\|39546317 - gi\|39546317\|ref\|NP_460424.2\| oriC-binding nucleoid-associated protein [Salmonella typhimurium LT2] gi\|206708838, gi... - gi\|207857035\|ref\|YP_002243686.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp... gi\|205272607, gi... - gi\|205352826\|ref\|YP_002226627.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp...	6.0E-26	[1..71]	[6..76]
gi\|47154986 - gi\|47154986\|emb\|CAE85185.1\| hypothetical protein [Escherichia coli] gi\|190907823, gi... - gi\|191171788\|ref\|ZP_03033334.1\| haemolysin expression modulating protein [Escherichia coli F11], gi\|... gi\|110344744, gi... - gi\|110643152\|ref\|YP_670882.1\| putative hemolysin expression modulating protein [Escherichia coli 536...	2.0E-23	[2..70]	[63..127]
gi\|9971679, gi\|1... - gi\|9971679\|dbj\|BAB12630.1\| ydfA [Escherichia coli], gi\|10955485\|ref\|NP_065337.1\| transcriptional reg...	7.0E-23	[2..70]	[10..74]
gi\|85059434, gi\|... - gi\|85059434\|ref\|YP_455136.1\| oriC-binding nucleoid-associated protein [Sodalis glossinidius str. 'mo...	3.0E-22	[1..70]	[1..70]
gi\|117622719, gi... - gi\|117622719\|ref\|YP_851632.1\| Hha protein [Escherichia coli APEC O1], gi\|115511843\|gb\|ABI99917.1\| Hh...	4.0E-22	[1..71]	[73..139]
gi\|253782325, gi... - gi\|253990875\|ref\|YP_003042231.1\| Haemolysin expression modulating protein [Photorhabdus asymbiotica]... gi\|36787149, gi\|... - gi\|37527713\|ref\|NP_931058.1\| hemolysin expression-modulating protein [Photorhabdus luminescens subsp...	5.0E-22	[1..71]	[1..67]
YMOA_YERPE - Modulating protein YmoA OS=Yersinia pestis GN=ymoA PE=1 SV=1 gi\|62825110 - gi\|62825110\|gb\|AAY16116.1\| YmoA [Yersinia intermedia] gi\|62825108 - gi\|62825108\|gb\|AAY16115.1\| YmoA [Yersinia frederiksenii] gi\|77974283 - gi\|77974283\|ref\|ZP_00829824.1\| hypothetical protein YfreA_01001863 [Yersinia frederiksenii ATCC 3364... gi\|162351064, gi... - gi\|77635244\|ref\|ZP_00797331.1\| hypothetical protein YpesA_01001409 [Yersinia pestis Angola], gi\|1624... gi\|152960419, gi... - gi\|77631946\|ref\|ZP_00794532.1\| hypothetical protein YpseI_01003336 [Yersinia pseudotuberculosis IP 3... gi\|165989985, gi... - gi\|166010985\|ref\|ZP_02231883.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|165927647, gi... - gi\|165927647\|ref\|ZP_02223479.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|167399288, gi... - gi\|167399288\|ref\|ZP_02304812.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|166205704, gi... - gi\|166212917\|ref\|ZP_02238952.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|167423614, gi... - gi\|167423614\|ref\|ZP_02315367.1\| hemolysin expression modulating protein [Yersinia pestis biovar Medi... gi\|166960492, gi... - gi\|167421573\|ref\|ZP_02313326.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|21957794, gi\|... - gi\|22124953\|ref\|NP_668376.1\| hemolysin expression-modulating protein [Yersinia pestis KIM], gi\|21957... gi\|51595328, gi\|... - gi\|51595328\|ref\|YP_069519.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosis IP... gi\|45440642, gi\|... - gi\|45440642\|ref\|NP_992181.1\| hemolysin expression-modulating protein [Yersinia pestis biovar Microtu... gi\|149291429, gi... - gi\|149365016\|ref\|ZP_01887051.1\| modulating protein YmoA (histone-like protein) [Yersinia pestis CA88... YMOA_YEREN - Modulating protein YmoA OS=Yersinia enterocolitica GN=ymoA PE=3 SV=1 gi\|145211728, gi... - gi\|145600032\|ref\|YP_001164108.1\| hemolysin expression-modulating protein [Yersinia pestis Pestoides ... gi\|15981076, gi\|... - gi\|218930168\|ref\|YP_002348043.1\| hemolysin expression-modulating protein [Yersinia pestis CO92], gi\|... gi\|169751965, gi... - gi\|170025431\|ref\|YP_001721936.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosi... gi\|167470956 - gi\|167470956\|ref\|ZP_02335660.1\| haemolysin expression modulating protein [Yersinia pestis FV-1] gi\|186894346, gi... - gi\|186894346\|ref\|YP_001871458.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosi... gi\|108808624, gi... - gi\|108808624\|ref\|YP_652540.1\| hemolysin expression-modulating protein [Yersinia pestis Antiqua], gi\|... gi\|108774765, gi... - gi\|229901348\|ref\|ZP_04516470.1\| hemolysin expression modulating protein [Yersinia pestis Nepal516], ... gi\|229695106, gi... - gi\|229838740\|ref\|ZP_04458899.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|229896107, gi... - gi\|229896107\|ref\|ZP_04511277.1\| hemolysin expression modulating protein [Yersinia pestis Pestoides A... Q66DR5\|Q66DR5_YERPS - Hemolysin expression modulating protein - Yersinia pseudotuberculosis gi\|229899308, gi... - gi\|229899308\|ref\|ZP_04514451.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|89102020, gi\|... - gi\|89102020\|ref\|ZP_01174690.1\| hypothetical protein Ypesb_01003933 [Yersinia pestis biovar Orientali... gi\|238759242, gi... - gi\|238759242\|ref\|ZP_04620409.1\| Hemolysin expression-modulating protein [Yersinia aldovae ATCC 35236... gi\|238783590, gi... - gi\|238783590\|ref\|ZP_04627611.1\| Hemolysin expression-modulating protein [Yersinia bercovieri ATCC 43... gi\|238729068, gi... - gi\|238791452\|ref\|ZP_04635090.1\| Hemolysin expression-modulating protein [Yersinia intermedia ATCC 29... gi\|238795523, gi... - gi\|238795523\|ref\|ZP_04639038.1\| Hemolysin expression-modulating protein [Yersinia mollaretii ATCC 43... gi\|123443323, gi... - gi\|123443323\|ref\|YP_001007297.1\| hemolysin expression-modulating protein [Yersinia enterocolitica su...	3.0E-21	[1..71]	[1..67]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQDYLLKF RKISSLESLE KLFDHLNYTL TDDMDIVNMY RAADHRRAEL VSGGRLFDVG  60
   61 QVPQSVWRYV Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1jw2A
Description:	Hemolysin expression modulating protein HHA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits