YRC Public Data Repository - Protein Structure Prediction

Protein:	GATC_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATC_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|71837492, gi\|... - gi\|71837492\|ref\|ZP_00677257.1\| Glutamyl-tRNA(Gln) amidotransferase C subunit [Pelobacter propionicus...	123.0	[0..1]	[94..56]
gi\|27262186 - gi\|27262186\|gb\|AAN87374.1\| Glutamyl-tRNA(Gln) amidotransferase subunit C [Heliobacillus mobilis]	121.0	[0..1]	[93..1]
GATC_THEP3 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Thermoanaerobacter pseudethanolicus (s... GATC_THEPX - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Thermoanaerobacter sp. (strain X514) G... gi\|242230393, gi... - gi\|242258081\|ref\|ZP_04802916.1\| glutamyl-tRNA(Gln) amidotransferase, C subunit [Thermoanaerobacter s... gi\|241884961, gi... - gi\|241902707\|ref\|ZP_04787439.1\| glutamyl-tRNA(Gln) amidotransferase, C subunit [Thermoanaerobacter b...	120.0	[0..1]	[94..1]
GATC_THETN - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Thermoanaerobacter tengcongensis GN=ga... GATC_CALS4 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Caldanaerobacter subterraneus subsp. t...	118.0	[0..1]	[94..1]
GATC_GEOSE - Glutamyl-tRNA(Gln) amidotransferase subunit C OS=Geobacillus stearothermophilus GN=gatC PE=3 SV=1 GATC_GEOKA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Geobacillus kaustophilus GN=gatC PE=3 ... gi\|221089214, gi... - gi\|221089214\|ref\|ZP_03558736.1\| glutamyl-tRNA(Gln) amidotransferase, C subunit [Geobacillus sp. Y412... GATC_GEOKA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Geobacillus kaustophilus (strain HTA42... gi\|229500304, gi... - gi\|229500304\|ref\|ZP_04393972.1\| glutamyl-tRNA(Gln) amidotransferase, C subunit [Geobacillus sp. Y412...	116.0	[0..2]	[94..3]
gi\|241880042, gi... - gi\|241907619\|ref\|ZP_04792196.1\| glutamyl-tRNA(Gln) amidotransferase, C subunit [Desulfovibrio vulgar... GATC_DESVV - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Desulfovibrio vulgaris subsp. vulgaris... GATC_DESVH - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Desulfovibrio vulgaris (strain Hildenb...	116.0	[0..1]	[93..1]
gi\|68201939, gi\|... - gi\|68230498\|ref\|ZP_00569681.1\| Glutamyl-tRNA(Gln) amidotransferase C subunit [Frankia sp. EAN1pec], ...	115.0	[0..1]	[94..91]
GATC_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Geobacter sulfurreducens GN=gatC PE=3 ... GATC_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Geobacter sulfurreducens (strain ATCC ...	115.0	[0..1]	[94..1]
GATC_CARHZ - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Carboxydothermus hydrogenoformans (str...	114.0	[0..1]	[93..1]
GATC_HYPNA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Hyphomonas neptunium (strain ATCC 1544...	114.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIDEKLLSK LEKLSALQIT KNRNETIAQL SEIVNFVEKL NELDLDSQEI TVSTIKGGAP  60
   61 LRIDEIRNSN VIDEVLDCAP KKQEHFFVVP KIIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2df4C
Description:	No description for 2df4C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits