YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3242
Organism:	Shewanella oneidensis
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3242.

Description	E-value	Query Range	Subject Range
gi\|95111825 - gi\|95111825\|emb\|CAK16549.1\| flagellar basal P-ring protein [Pseudomonas entomophila L48] FLGI_PSEE4 - Flagellar P-ring protein OS=Pseudomonas entomophila (strain L48) GN=flgI PE=3 SV=1	544.0	[0..3]	[363..5]
FLGI_VIBVU - Flagellar P-ring protein OS=Vibrio vulnificus GN=flgI PE=3 SV=2 FLGI_VIBVY - Flagellar P-ring protein OS=Vibrio vulnificus (strain YJ016) GN=flgI PE=3 SV=1 FLGI_VIBVU - Flagellar P-ring protein OS=Vibrio vulnificus (strain CMCP6) GN=flgI PE=3 SV=2	541.0	[0..1]	[363..1]
tr\|E4RB16\|E4RB16... - Flagellar P-ring protein OS=Pseudomonas putida (strain BIRD-1) GN=flgI PE=3 SV=1 gi\|148510769, gi... - gi\|148546711\|ref\|YP_001266813.1\| flagellar basal body P-ring protein [Pseudomonas putida F1], gi\|148... tr\|I7C516\|I7C516... - Flagellar P-ring protein OS=Pseudomonas putida (strain DOT-T1E) GN=flgI PE=3 SV=1 FLGI_PSEPK - Flagellar P-ring protein OS=Pseudomonas putida (strain KT2440) GN=flgI PE=3 SV=1	540.0	[0..3]	[363..5]
gi\|82715212, gi\|... - gi\|82737694\|ref\|ZP_00900540.1\| flagellar P-ring protein precursor FlgI [Pseudomonas putida F1], gi\|8...	540.0	[0..3]	[363..7]
gi\|5361012 - gi\|5361012\|gb\|AAD42919.1\|U12817_13 polar flagellar FlgI homolog [Vibrio parahaemolyticus]	539.0	[0..1]	[363..1]
FLGI2_VIBPA, FLG... - (Q9X9J4) Flagellar P-ring protein precursor (Basal body P-ring protein), Flagellar P-ring protein 2 ... gi\|153840136, gi... - gi\|153840136\|ref\|ZP_01992803.1\| flagellar P-ring protein FlgI [Vibrio parahaemolyticus AQ3810], gi\|1... FLGI2_VIBPA - Flagellar P-ring protein 2 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=flgI2 ...	538.0	[0..1]	[363..1]
gi\|91189527, gi\|... - gi\|91225877\|ref\|ZP_01260846.1\| flagellar P-ring protein precursor I [Vibrio alginolyticus 12G01], gi...	535.0	[0..1]	[363..1]
FLGI_VIBF1 - Flagellar P-ring protein OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=flgI PE=3 SV=1	532.0	[0..4]	[363..11]
FLGI_SHESM - Flagellar P-ring protein OS=Shewanella sp. (strain MR-4) GN=flgI PE=3 SV=1	529.0	[0..1]	[363..1]
gi\|194545205, gi... - gi\|84322076\|ref\|ZP_00970421.1\| COG1706: Flagellar basal-body P-ring protein [Pseudomonas aeruginosa ... FLGI_PSEAB - Flagellar P-ring protein OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=flgI PE=3 SV=1 FLGI_PSEAE - Flagellar P-ring protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12... gi\|126192820, gi... - gi\|84328546\|ref\|ZP_00976550.1\| COG1706: Flagellar basal-body P-ring protein [Pseudomonas aeruginosa ... FLGI_PSEAE - Flagellar P-ring protein OS=Pseudomonas aeruginosa GN=flgI PE=3 SV=1 FLGI_PSEA8 - Flagellar P-ring protein OS=Pseudomonas aeruginosa (strain LESB58) GN=flgI PE=3 SV=1 FLGI_PSEA7 - Flagellar P-ring protein OS=Pseudomonas aeruginosa (strain PA7) GN=flgI PE=3 SV=1 gi\|107100529 - gi\|107100529\|ref\|ZP_01364447.1\| hypothetical protein PaerPA_01001554 [Pseudomonas aeruginosa PACS2]	529.0	[0..21]	[363..23]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKLIFAVF MLAFSMPSQA ERIKDIANVQ GVRNNQLIGY GLVVGLPGTG EKTNYTEQTF  60
   61 TTMLKNFGIN LPENFRPKIK NVAVVAVHAD MPAFIKPGQE LDVTVSSLGE AKSLRGGTLL 120
  121 QTFLKGVDGN VYAIAQGSLV VSGFSADGLD GSKVIQNTPT VGRIPNGAIV ERSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPFSTGDYL TFNLRRSDFS TAQRMADAIN DLLGPDMARP LDATSIQVSA PRDVSQRVSF  60
   61 LATLENIEVE P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [246-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEESAKVIVN SRTGTIVVGQ NVKLLPAAVT HGGLTVTIAE ATQVSQPNAL ANGQTTVTSN  60
   61 STINATESDR RMFMFNPGTT LDELVRAVNL VGAAPSDVLA ILEALKVAGA LHGELIII

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits